Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55860 208 / 2e-59 Plant protein of unknown function (DUF827) (.1) AT4G17210 155 / 6e-41 Plant protein of unknown function (DUF827) (.1) AT4G33390 62 / 7e-10 Plant protein of unknown function (DUF827) (.1) AT2G26570 59 / 6e-09 WEB1 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) AT1G12150 56 / 5e-08 Plant protein of unknown function (DUF827) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G004100 [exp] 663 / 0 AT1G12150 293 / 2e-92 Plant protein of unknown function (DUF827) (.1) Potri.001G369200 [exp] 257 / 1e-77 AT5G55860 516 / 4e-176 Plant protein of unknown function (DUF827) (.1) Potri.017G118900 [exp] 60 / 3e-09 AT1G66840 305 / 5e-95 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1) Potri.004G095800 [exp] 53 / 5e-07 AT1G66840 314 / 1e-98 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1) Potri.002G126700 [exp] 51 / 1e-06 AT2G26570 694 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Potri.014G029800 [exp] 51 / 2e-06 AT2G26570 669 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039107 [exp] 368 / 3e-121 AT1G12150 360 / 5e-118 Plant protein of unknown function (DUF827) (.1) Lus10038751 [exp] 363 / 3e-119 AT1G12150 354 / 5e-116 Plant protein of unknown function (DUF827) (.1) Lus10022531 [exp] 264 / 8e-80 AT5G55860 573 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10016626 [exp] 260 / 8e-79 AT5G55860 577 / 0.0 Plant protein of unknown function (DUF827) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05701 [poplar] [flax] WEMBL Weak chloroplast movement under blue light
Representative CDS sequence Show only first row Show all	>Potri.016G005200.1 pacid=42809428 polypeptide=Potri.016G005200.1.p locus=Potri.016G005200 ID=Potri.016G005200.1.v4.1 annot-version=v4.1 ATGGTAAACATCAGGGGAGCAGATCAACAAAAAGGTTCAGCATCACCAAGGGCAGAGGTGGGAGAGATTGACACCAAGAAGCCATTTCAATCTGTCAAAG CTGCGGTTAGTTTATTTGGAGAAGTAGCTCTCAAAGGGAAACCTGCTGTCAGGAGATCAAGGCTTTCTTCAGAGAATGTGATTGACAAGGAGACACAACT TCTACTGGCTCAAAGAGAAGTAAACAGGTTCAAGAGGGTGCTGCAGAGTGCCGAAACTACAAAAGCTCGAGCGAATTCTGAACTTCAAAAGGCGAAGAGA ACATTGAATGATTTAACCACCAAGCTCAAAGCTGTAGATGAGTCCAAGAAATCAGCAATAGAAACTGCAGAAGCGGTAAAAGAAAAGGCTAGGCGACTTG AAGAAGCAAAATCCCAACAACTCGTGGGGAATGCAGCTCGAAAACGGGAATTGGATGAGGCAAGACAACAGTACAAGATGGCTGCTCGTGAACTTAATGC TGCAAAGCAACAAATCAACAAGATCCGACAGGATTTTGATGCAGCATTGGAGTCAAAATCATCTTCGTTCCAGCAGGCAGCAGAAACTCAGCGTTCGGCA AATATGAACAAAGAAAGGGTTAGTGAGCTTTCGAAGGAAATTGGAGCTATGCGGGAATCAGCTCAACAACTGAAGATTGCTTCTGCACAAATTCAAGAAC AGCAGGAAAATTTAGTGGAAGAAAAAGATGCTCGCATACATTTTTGTAAGGCTGCCACGGCAGAAGCAGAAAAGAACTTGGAGATTTTGAAGAAAGAATA TGATCCTGAGCTCACAAAGAATCTTGAGGCGAAGCTCGCAGAAACATCAGCAGAGATTGAACTTTTACAAGAAGAGATGAAAAAGGCCCATGCCTTCGAA ATGGAAAAGGTAAAGGTTTTAACCATCGAGTTCAATGAAGCAACGAAGGCACTGCAAGAAATTGCCACCGAAGAGAGTTCTCTTCGACATATGTTGACAT CCCTTACAGCAGAATTGGAAAACGTGAAGACAGAGAAAATTGAATTGCTGGAGAAAGAAATAGAGAAAGAATATGCTGCAATGGAAAAGGAAACTGAAAG TGCTAGAAGAGAAGCCGAAGAGTTGAAGAAGAAAGCCGAGGAGATGAGGAAGAATGCTGAAGAGCTGAAGGAAGAAACAAAAAATGCCAGATTACTGGCT CAAGATGTGGAGGGAAAGCTAGAACTTGCTCTTAAAGAGGCTAAAGAAGCCAAGGAAGCAGAAAAGAAAGCTCACGAAGATATGAAGACATTATCTGAAA GAGAGAGCATTCAAGATCAAGATTTCGGCAACAAGATCAAACTTGCACCGGAAGAGTTCGGGAGTTTGAAAAAGAAAGAGGAGGAATCAGGAAATATTGC AGATACAAAAGTGGCTGATGCCATGGCTCAGATAGAAGTAGTGAAGGCAAGAAATAAAGAGGCAGAAAAGAAATTGGAGGCAAATTTAAAAGCAATTGAA GAAATTAAAGAAGCAACTGACATGGCTTTGAGGTCAGCAGATATGTCAGAGGCTGCAGAAAAGACCCTCGAGACTCAACTCCAGAGGTGGCGTGAGCAAT CGCAAACGATGGTGGTAGCTTAA
AA sequence Show only first row Show all	>Potri.016G005200.1 pacid=42809428 polypeptide=Potri.016G005200.1.p locus=Potri.016G005200 ID=Potri.016G005200.1.v4.1 annot-version=v4.1 MVNIRGADQQKGSASPRAEVGEIDTKKPFQSVKAAVSLFGEVALKGKPAVRRSRLSSENVIDKETQLLLAQREVNRFKRVLQSAETTKARANSELQKAKR TLNDLTTKLKAVDESKKSAIETAEAVKEKARRLEEAKSQQLVGNAARKRELDEARQQYKMAARELNAAKQQINKIRQDFDAALESKSSSFQQAAETQRSA NMNKERVSELSKEIGAMRESAQQLKIASAQIQEQQENLVEEKDARIHFCKAATAEAEKNLEILKKEYDPELTKNLEAKLAETSAEIELLQEEMKKAHAFE MEKVKVLTIEFNEATKALQEIATEESSLRHMLTSLTAELENVKTEKIELLEKEIEKEYAAMEKETESARREAEELKKKAEEMRKNAEELKEETKNARLLA QDVEGKLELALKEAKEAKEAEKKAHEDMKTLSERESIQDQDFGNKIKLAPEEFGSLKKKEEESGNIADTKVADAMAQIEVVKARNKEAEKKLEANLKAIE EIKEATDMALRSADMSEAAEKTLETQLQRWREQSQTMVVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55860			Plant protein of unknown funct...		Potri.016G005200 [exp]	0	1
AT1G06530		PMD2	peroxisomal and mitochondrial ...		Potri.002G060200 [exp]	4.89	0.8740
AT1G76810			eukaryotic translation initiat...		Potri.019G103600 [exp]	13.71	0.8757
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Potri.018G023500 [exp]	14.38	0.8423
AT3G50740		UGT72E1	UDP-glucosyl transferase 72E1 ...		Potri.007G029800 [exp]	15.32	0.8237
AT5G50740			Heavy metal transport/detoxifi...		Potri.016G006600 [exp]	15.42	0.8499
AT2G43330		ATINT1	inositol transporter 1 (.1)		Potri.017G032600 [exp]	19.97	0.8430
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.015G130701 [exp]	24.24	0.8530
AT2G22795			unknown protein		Potri.007G008600 [exp]	26.98	0.8629
ATMG00520		ATMG00520.1, MA...	Intron maturase, type II famil...		Potri.007G062302 [exp]	27.22	0.8506
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.008G196100 [exp]	27.78	0.7587

Compare expression of checked genes

Potri.016G005200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.