Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47690 1698 / 0 binding (.1.2.3) AT1G77600 520 / 7e-158 ARM repeat superfamily protein (.1.2.3) AT4G31880 191 / 2e-49 unknown protein AT1G15940 172 / 2e-43 Tudor/PWWP/MBT superfamily protein (.1) AT1G80810 157 / 7e-39 Tudor/PWWP/MBT superfamily protein (.1.2) AT5G10950 85 / 8e-17 Tudor/PWWP/MBT superfamily protein (.1) AT4G02070 62 / 3e-09 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT1G05830 52 / 3e-06 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT4G32620 52 / 5e-06 Enhancer of polycomb-like transcription factor protein (.1.2) AT2G44440 49 / 2e-05 AtEML4 EMSY-like 4, Emsy N Terminus (ENT) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G004750 [exp] 2647 / 0 AT5G47690 1681 / 0.0 binding (.1.2.3) Potri.002G084300 [exp] 644 / 0 AT1G77600 1136 / 0.0 ARM repeat superfamily protein (.1.2.3) Potri.006G263300 [exp] 202 / 3e-52 AT4G31880 424 / 8e-133 unknown protein Potri.018G020400 [exp] 190 / 9e-49 AT4G31880 389 / 3e-120 unknown protein Potri.001G046500 [exp] 169 / 3e-42 AT4G31880 267 / 1e-76 unknown protein Potri.018G109600 [exp] 145 / 3e-35 AT4G31880 180 / 3e-47 unknown protein Potri.003G181300 [exp] 144 / 2e-34 AT1G80810 231 / 3e-64 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.006G186700 [exp] 142 / 3e-34 AT4G31880 167 / 8e-43 unknown protein Potri.014G121701 [exp] 61 / 8e-09 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039082 [exp] 1853 / 0 AT5G47690 1661 / 0.0 binding (.1.2.3) Lus10038777 [exp] 1751 / 0 AT5G47690 1579 / 0.0 binding (.1.2.3) Lus10025655 [exp] 459 / 2e-136 AT1G77600 899 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10018180 [exp] 444 / 6e-132 AT1G77600 864 / 0.0 ARM repeat superfamily protein (.1.2.3) Lus10017121 [exp] 195 / 2e-50 AT4G31880 473 / 2e-152 unknown protein Lus10018332 [exp] 193 / 9e-50 AT4G31880 464 / 2e-149 unknown protein Lus10002307 [exp] 115 / 4e-26 AT4G31880 214 / 4e-61 unknown protein Lus10026078 [exp] 113 / 5e-26 AT4G31880 228 / 1e-66 unknown protein Lus10010010 [exp] 59 / 3e-08 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10041252 [exp] 59 / 6e-08 AT4G32620 923 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G005400.6 pacid=42810282 polypeptide=Potri.016G005400.6.p locus=Potri.016G005400 ID=Potri.016G005400.6.v4.1 annot-version=v4.1 ATGGGAGAGGAGAAGAAGCTCGAAGAGAAGTTAAAGGAGGTGGGATCCAAGCTGGAAACACTTCCTTCTACTAAAGATGGTGTTGTTAAACTTCTGAAGC AAGCTGCTACTTGTCTTTCTGAGATGGATCAGTCACCACCGGCTTCAGTGTCAGAGTCAATGCAGCCTTTTCTTGATGCAATTGTAAAGCCAGAATTGTT GAAGCATCAAGATAGGGATGTTAAGCTTCTAGTTGCAACCTGTATTTGTGAGATAACCCGGATCACTGCACCCGAAGCTCCTTACAGTGATGATGTTTTA AAGGATATATTCCACTTGATCGTAGGCACATTTAGTGGGTTAAGTGATACTGGTGGTCCATCATTTGGAAGGAGAGTTGTTATTTTGGAGACTCTTGCCA AATATAGGTCTTGTGTTGTGATGCTGGATCTTGAATGTAATGATCTGGTGAATAAGATGTTCAGTACATTTTTTACTGTTGCCAGTGATGATCATCAAGA AAGTGTATTATCATCAATGCAAACAATAATGGTTGTTCTCATAGAAGAAAGCGAGGATTTCAGAGAGGATCTTCTACTTGTTATCTTATCTGTATTAGGT CGTAACAGAAGTGATATCTCCATGTCAGCAAGGAAACTTGCCATGAAAGTTATAGAGCTTTGTGCAGGAAAACTTGAAGCTGGCATAAAGCAGTTCCTCA TATCATTAATGTCAGGAGATAGCAGGTTGGCAAATAGTAAAATCGACTACCATGAAGTTATATATGATGTTTACCGTTGTGCTCCTCAGATCCTATCAGG AGTCGTTCCATACCTCACAGGAGAGCTGCTGACCGATCAGCTAGACACTCGTTTAAAAGCAGTGGGGTTGGTTGGGGATCTATTTTCTTTACCTGGCTCT GCCATCACAGAAGCATTTCAGCCAATCTTTTCAGAGTTTTTGAAAAGATTGAGTGATAGAGTAGTTACCATCCGGATGTGTGTCCTTGAATGTGTCAAAG GCTGTCTTTTGTCAAATCCTTTTCGAGCAGAGGCAGCTCAAATCATCTCTGCCCTTTGTGACCGACTGTTGGACTATGATGAGAATGTTCGAAAGCAGGT TGTTGATGTAATCTGTGATGTAGCATGCCATGCCTTGAATTCTGTCCCTGTCGAAACCATAAGGCTAGTTGCAGAACGTCTTCGAGACAAATCTCAACTT GTTAAAAGATATACTATGGAGAGAATGGCTGAGATATTCAGGGTTTATTGTGTAAAGTCTTCTGATGGCTCAATCAATCCTGGTGAATATGATTGGATTC CTGGAAGGATTTTGAGATGTTTGTATGACAAAGATTTCAGATCAGATACAATTGAATCTGTTCTTTGTGGCTCTCTGTTTCAGACTGAATTTGCAGTAAA AGATAGATGTAAATATTGGGTAAGAATCTTCTCTGTCATAGACAAAGTTGAGGTGAAAGCTCTTGAAAAAATACTGGAGCAGAAGCAAAGGTTACAGCAG GAGATGCAGAGGTATCTATTACTGAGGCAGTCGCATCAGGACAGAGATACTCCTGAGATCCAAAAAAAGGTTCTGTTCTGTTTTCGGATCATGTCTCGCT CCTTTGCAGAGCCTGCCAAGGCTGAGGAAAATTTTCATATAGTTGATCAATTGAAAGATGCCAATATTTGGAAGATTTTAACAAATCTACTCGATCCAAG CACTACCTTCCATCAAGCTTGCACTGGTCGGGATGATTTACTTAAAATACTCGGCGAGAAACACCGACTCTATGATTTTTTGAGCAGTCTTTCGATGAAG TGTTCTTATTTACTTTTCAACAAGGAGCATGTGAAAGAAATTCTTTCGGACGTCAACACACATAACTCTGCTGGAAATATGCATTTTACTCGATCTTGTA TGGATTTACTGGTGATTCTTGCTCGCTTCAGTCCATTGCTGCTTGGTGGCTCAGGGGAAGAGCTAATAAATTTTCTGAAAGATGACAACGAAATAATAAA AGAAGGTGCTTTGCATGTTTTGGCAAAGGCTGGTGGTACAATCCGAGAACAACTTGCGGAGTCATCAAGTGCAATTGACCTTATATTGGAGAGGCTTTGC TTAGAAGGTAGTCGAAGACAGGCCAAGTATGCTGTGCATGCCCTAGCAACAATCACAAAGGATGATGGGCTCAAGTCCCTCTCTGTTTTATACAAGAGAC TCGTTGACATGCTGGAGGAGAAGAGACATTTGCCTGCTGTACTACAATCTCTGGGATGCATAGCACAGGCTGCAATGCCGGTTTTTGAAACTAGAGAAAA TGAAATTGAAAAATTCATTAAGAACAAAATTCTAGAATGCAGTAGTAAATCAGAAGATAATACAAAAGCTTGCTGGGACGACAAAAGTGAACTTTGTTTG TTGAAGATATATGGAATTAAGACATTGGTCAACAGCTACTTGCCGGTTAAAGATGTTCAACTTCGTCGTGGTATTGACAGCCATCTGGAAATCCTTAGAA ACATACTTCTTTTTGGAGAAATATCGAAAGATATTGAATCAAGTTCAGTTGATAAGGCCCACTTGAGGCTTGCTTCTGCAAAGGCAGTTCTTCGTTTGTC GAAGCATTGGGATCATAAGATATCTGTTGATCTCTTGCATTTAACCTTGAGGACACCAGAGATTGCTTTCCCACAAGCTAGGAAATTATTCCTGAGTAAA GTTCACCAATACATCAAGGACCGGGTTCTGGATCCAAAGTATGCTTGTGCCTTCTTATTTAATATGACAGGATCCAAACCCCTTGATTTTGAGGAGGAGA ATCAGAACCTTGCTGATATTATTCAGATGCTCCAACAAGCTAAAACTCGACACGTCCCTGTGCAAAGTGATGCAAATCCCTTGTCAGTTTATCCTGAATA TATTCTCCCATATTTGGTCCATGCTCTTGCTCATCAATCATGTCCTAATGTAGATGAGTGCAAGGATATTAAAGCATTTGAACCAATATACCGGCAACTG TACTTGATCCTTTCCATGCTGGTGCATAAAGATGAAGGTGTCAAGTTGGAAGCTGGTATCAACAAGGAGAAGGAGAAGGAGAAAGAAAATGAGAAGGAGA AGGACAATGACAAAGACAAAGACAAAGACAAAGAGACCAACTCTCTCATAGTTTCCATCTTTCAGAGTATAAAGTGCTCAGAAGATGTAGTTGATCGAGA GAAGTCAAAGAATTCACATGCTATCTCTGAACTTGGGCTGTCAATCATCAAGCGCTTAGCTCCCAAGGAGGATGATTTACAAACCTTGCCTTCACCAGTT TCTTTGCCTCCACTGCTGTACAAAATATATGAATATAAAGAATGCGAAGATGCTGTGGCAAATGAAGGGAAAACATGGTTGGCTGAAGAAAGTGTCTTGA CCCACTTTGACTCGCTTAAGTTTGAAACTAATGGAACTTCCTTTTTGTCACATCAGGCTAGTTCAGATATTGCTGGGGATGAGGTTCTAAATGACAGTGA AAGAGAAGCTAATGAAGTGACTCTTGGGAAAATGATAAAGCAATTAAAATCTCAGGGAAATAAAGGTGGAAAAACAAAAAAGAACAAGTCTTCAGCAGCT AAAGTGAAAGATGCTGAAAACGATGTTGATATCTTGAAGATGGTCCGGGAGATCAATTTGGATAATATGGGGCTATCTAATATGTTTGAGTCAAGCAATG GGCACAAAGATCTAAGTGGGAAGATAAAGTCAGAATCAGAGCATCAAAAAGTGAAAAAAGGAAATGTTAGTGATATGACACCTGTGCCGGTACCTAAACG TCGAAGATCATCATCTGCTCATAATGCTTCTAGATTTCCCCGAAGTCTTTTAAAGGATCCTTCGAGAGCTTCAGAGGATGATTCAAGCCCTGATTTGAAA GGAAAAAAGTCCAAGTCCAAGAGCGCTGGATCTGAATTGTTGGTATCAGGCATTCAAAAGAAGAAAAATGTCTCATCCAAACTTAAAGGCAAAAGCTCTG AGTTGGGTGACAATGGCAAGGAAAATGAAGTTGGAGAATCTGACAAAGATAACCTGATGCCTGGTGTGCTAATGGAGACTGATAAGGTCAATACAACTAA TAGCCCCCAGTCTTTGACTGGTTCTATGAAGAAGCGGAGAAGAAGTGTAGCAGGGTTGGCCAAGTGCACAACGAAGAAAAGTGGCATTAATATTGAGGAG ATTATGGGTTACAGAATAAAAGTTTGGTGGCCCATGGATAAGAAGTTTTATGAAGGCACCATCAAATCTTATGATCCTTTGAAAAGGAAACATGTGATAT TATATGATGATGGAGATATAGAAGTACTCCGTTTAGAAAAAGAGCGGTGGGAGCTCGTTGACAATGGGCCCAAGCGCACAAAGAAGTCAAATTCATTTAA GCGCACCCCTTCAAAGGACGTTTCACCTGCTCAGAAAAATAGAACATCCAGTAGTTTAAGTCAGAATAAGAAGTCAGTGACAATTGTTAAAAAGAAAAGA ACGCCATCAAAAAACTTAAAGCGTGTGCATAAAGAGCCAAAGAACAAAGTTGATTCTGATGTATCAAGCCCTGAACATACCATGGCATCTGGAGGAGATA AGCTGAAATCAGATGATTCTGAAGGGGATCATGCTGAAAGGTTGTCCCAGGGCATGATGGATGTCGATGAATCTGACAAGGAAGTGGTGTCAATTTCCAA AGGTAAACACTTGGAAGACACAGAGGAAAGATCAAATCATTCTGAGGAATCTGATGGAGAAGTGAAATCCAATTATGAAGCAGAAGTTTCTGAAGATATG GAAAGCATACCAGAAGATGATAAAAAAGGTGATCCCAGAGAGGAATCCCATTCAGAAGAGAAAGACGTAGATGAATCAAGTGAAGCCTTGGGAGTGGAAG TCAATGAAGACAAATCAGATTCTGAAGGGAATCGAGATGTAGATGTCAGGAAACCTAGTAGAAAATCAAAGAAGCTCCGTAAGAAATCATCAAATCCTGT CAATGAAGAGGATGCTGAAATCTCTGACGATGAAACTCTTAGCAATTGGAAGCATAAAGTAGGGAAATCAGCATCAAGACGAGCAAGGTGA
AA sequence Show only first row Show all	>Potri.016G005400.6 pacid=42810282 polypeptide=Potri.016G005400.6.p locus=Potri.016G005400 ID=Potri.016G005400.6.v4.1 annot-version=v4.1 MGEEKKLEEKLKEVGSKLETLPSTKDGVVKLLKQAATCLSEMDQSPPASVSESMQPFLDAIVKPELLKHQDRDVKLLVATCICEITRITAPEAPYSDDVL KDIFHLIVGTFSGLSDTGGPSFGRRVVILETLAKYRSCVVMLDLECNDLVNKMFSTFFTVASDDHQESVLSSMQTIMVVLIEESEDFREDLLLVILSVLG RNRSDISMSARKLAMKVIELCAGKLEAGIKQFLISLMSGDSRLANSKIDYHEVIYDVYRCAPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFSLPGS AITEAFQPIFSEFLKRLSDRVVTIRMCVLECVKGCLLSNPFRAEAAQIISALCDRLLDYDENVRKQVVDVICDVACHALNSVPVETIRLVAERLRDKSQL VKRYTMERMAEIFRVYCVKSSDGSINPGEYDWIPGRILRCLYDKDFRSDTIESVLCGSLFQTEFAVKDRCKYWVRIFSVIDKVEVKALEKILEQKQRLQQ EMQRYLLLRQSHQDRDTPEIQKKVLFCFRIMSRSFAEPAKAEENFHIVDQLKDANIWKILTNLLDPSTTFHQACTGRDDLLKILGEKHRLYDFLSSLSMK CSYLLFNKEHVKEILSDVNTHNSAGNMHFTRSCMDLLVILARFSPLLLGGSGEELINFLKDDNEIIKEGALHVLAKAGGTIREQLAESSSAIDLILERLC LEGSRRQAKYAVHALATITKDDGLKSLSVLYKRLVDMLEEKRHLPAVLQSLGCIAQAAMPVFETRENEIEKFIKNKILECSSKSEDNTKACWDDKSELCL LKIYGIKTLVNSYLPVKDVQLRRGIDSHLEILRNILLFGEISKDIESSSVDKAHLRLASAKAVLRLSKHWDHKISVDLLHLTLRTPEIAFPQARKLFLSK VHQYIKDRVLDPKYACAFLFNMTGSKPLDFEEENQNLADIIQMLQQAKTRHVPVQSDANPLSVYPEYILPYLVHALAHQSCPNVDECKDIKAFEPIYRQL YLILSMLVHKDEGVKLEAGINKEKEKEKENEKEKDNDKDKDKDKETNSLIVSIFQSIKCSEDVVDREKSKNSHAISELGLSIIKRLAPKEDDLQTLPSPV SLPPLLYKIYEYKECEDAVANEGKTWLAEESVLTHFDSLKFETNGTSFLSHQASSDIAGDEVLNDSEREANEVTLGKMIKQLKSQGNKGGKTKKNKSSAA KVKDAENDVDILKMVREINLDNMGLSNMFESSNGHKDLSGKIKSESEHQKVKKGNVSDMTPVPVPKRRRSSSAHNASRFPRSLLKDPSRASEDDSSPDLK GKKSKSKSAGSELLVSGIQKKKNVSSKLKGKSSELGDNGKENEVGESDKDNLMPGVLMETDKVNTTNSPQSLTGSMKKRRRSVAGLAKCTTKKSGINIEE IMGYRIKVWWPMDKKFYEGTIKSYDPLKRKHVILYDDGDIEVLRLEKERWELVDNGPKRTKKSNSFKRTPSKDVSPAQKNRTSSSLSQNKKSVTIVKKKR TPSKNLKRVHKEPKNKVDSDVSSPEHTMASGGDKLKSDDSEGDHAERLSQGMMDVDESDKEVVSISKGKHLEDTEERSNHSEESDGEVKSNYEAEVSEDM ESIPEDDKKGDPREESHSEEKDVDESSEALGVEVNEDKSDSEGNRDVDVRKPSRKSKKLRKKSSNPVNEEDAEISDDETLSNWKHKVGKSASRRAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47690			binding (.1.2.3)		Potri.016G005400 [exp]	0	1
AT5G47690			binding (.1.2.3)		Potri.006G004750 [exp]	1.41	0.9162
AT3G19190		ATATG2	autophagy 2 (.1)		Potri.004G141700 [exp]	2.00	0.8938
AT2G19390			unknown protein		Potri.006G146600 [exp]	6.00	0.8726
AT3G14470			NB-ARC domain-containing disea...		Potri.001G029300 [exp]	6.63	0.8366
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Potri.013G085000 [exp]	10.09	0.8576
AT1G30410		ATMRP13, ABCC12	ATP-binding cassette C12, mult...		Potri.004G034700 [exp]	11.31	0.8312	ATMRP12.4
AT1G74770			zinc ion binding (.1)		Potri.015G066600 [exp]	11.31	0.8142
AT4G15880		ATESD4, ESD4	EARLY IN SHORT DAYS 4, Cystein...		Potri.010G013700 [exp]	11.48	0.8125
AT4G27190			NB-ARC domain-containing disea...		Potri.001G433466 [exp]	13.22	0.8124
AT1G33050			unknown protein		Potri.001G452300 [exp]	14.00	0.8172

Compare expression of checked genes

Potri.016G005400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.