Plant FIBer expression Database

Potri.016G005500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G47680 329 / 3e-112 AtTRM, TRM10 tRNA modification 10, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G004900
[exp]
476 / 4e-170 AT5G47680 312 / 1e-105 tRNA modification 10, unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038778
[exp]
381 / 1e-132 AT5G47680 371 / 1e-128 tRNA modification 10, unknown protein
Lus10039081
[exp]
364 / 5e-125 AT5G47680 358 / 1e-122 tRNA modification 10, unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0098 SPOUT PF01746 tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase
Representative CDS sequence
>Potri.016G005500.1 pacid=42810590 polypeptide=Potri.016G005500.1.p locus=Potri.016G005500 ID=Potri.016G005500.1.v4.1 annot-version=v4.1
ATGGAGGAAGAGAAAGAAACAAAGCAAAATGACCAAAACACCCTAGAGAACCAACCCAATTCACAGCACACCACACTCTCCAAAAACGCAAAGAAGAAAC
TCCTGAAGCAGCAAAAATGGGAAGCAAAGAAAGCAGAGAAGAAGGCACAAATGAAGGAGCAAAAAAAGAAAGAAGGAGAGAGGAAGAGAAGAGAATGGGA
AGAGAAACTATCAAGCTGTGCAAGTGAAGAAGAAAGGTTGAAGCTTATAGAGTCAAGGAGAGAGTTAAGGAAAGAGAGAATGGGGAAGAGGGCAGAAGAG
AAAGAAGAGAAGACGCAGAGGCTTAGGAAAGCTAAAGAATTTGGTCAGAATATTGTGATTGATCTTGAGTTTGCTGATCTTATGACTAACATTGAGATTC
ACAGTCTTGTTCAACAGATCATTTACTGTTATGCTGTGAATGGAAGATGTGCATCCCCTGGTCACCTCTGGTTGACTGGGTGCAGGGGGGAAATGGAGAA
CCAATTGCAAAGGCTCCCAGGATTTGATAAATGGAGTATTGAGAAGGAAAGTCAATCATATATTGAAGCATTACAAGATCAAAAGGAAAATTTGGTGTAT
CTTACAGCAGATTCTGAAACAGTGCTAGACGAACTTGATCTGAAGAAAATATATATTGTTGGCGGGTTAGTGGATCGGAATCGGTGGAAAGGCTTAACCA
TGAAGAAAGCAAACGAGCAAGGAATCCAAACAGCAAAACTTCCTATAAGCAGTTACTTGAAGATGTCAAGTTCTCAGGTACTCACTGTGAACCAGGTGGT
AGAGATCCTGCTCAAGTTTGTGGAAACAAAAGATTGGAAAACTTCATTCTTTCAAGTAATTCCTCAAAGGAAAAGAGGCGAAACTGATCCAGAAGAACTC
GAAAGAGTAGATAGAGAAGAGTTGGAGGACGGAAATGAGCCATCCGAGAAGAAAAGGCAATGCGATGAAGTTTCTTTTACACAGCAGAACTAA
AA sequence
>Potri.016G005500.1 pacid=42810590 polypeptide=Potri.016G005500.1.p locus=Potri.016G005500 ID=Potri.016G005500.1.v4.1 annot-version=v4.1
MEEEKETKQNDQNTLENQPNSQHTTLSKNAKKKLLKQQKWEAKKAEKKAQMKEQKKKEGERKRREWEEKLSSCASEEERLKLIESRRELRKERMGKRAEE
KEEKTQRLRKAKEFGQNIVIDLEFADLMTNIEIHSLVQQIIYCYAVNGRCASPGHLWLTGCRGEMENQLQRLPGFDKWSIEKESQSYIEALQDQKENLVY
LTADSETVLDELDLKKIYIVGGLVDRNRWKGLTMKKANEQGIQTAKLPISSYLKMSSSQVLTVNQVVEILLKFVETKDWKTSFFQVIPQRKRGETDPEEL
ERVDREELEDGNEPSEKKRQCDEVSFTQQN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G47680 AtTRM, TRM10 tRNA modification 10, unknown ... Potri.016G005500
[exp]
0 1
AT1G75335 unknown protein Potri.013G126701
[exp]
3.16 0.8938
AT5G47680 AtTRM, TRM10 tRNA modification 10, unknown ... Potri.006G004900
[exp]
7.48 0.8514
AT5G53800 unknown protein Potri.011G121000
[exp]
10.90 0.8468
AT1G06530 PMD2 peroxisomal and mitochondrial ... Potri.005G201400
[exp]
12.00 0.8222
AT1G03350 BSD domain-containing protein ... Potri.015G050700
[exp]
12.24 0.8220
AT1G49520 SWIB complex BAF60b domain-con... Potri.004G145200
[exp]
14.89 0.8732
AT5G10270 CDKC;1 cyclin-dependent kinase C;1 (.... Potri.006G024600
[exp]
15.58 0.8348 Pt-CDC2.5
AT5G41020 MYB myb family transcription facto... Potri.015G095000
[exp]
17.49 0.8780
AT5G43490 unknown protein Potri.017G058500
[exp]
22.69 0.8743
AT5G41020 MYB myb family transcription facto... Potri.003G168900
[exp]
24.81 0.8644

Potri.016G005500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.