Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47650 352 / 6e-122 ATNUDX2, ATNUDT2 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) AT4G25434 308 / 1e-104 ATNUDT10 nudix hydrolase homolog 10 (.1.2) AT4G12720 282 / 3e-94 ATNUDX7, GFG1, AtNUDT7, NUDT7 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4) AT5G47240 268 / 1e-87 ATNUDT8 nudix hydrolase homolog 8 (.1) AT2G04450 265 / 2e-87 ATNUDX6, ATNUDT6 nucleoside diphosphates linked to some moiety X 6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, nudix hydrolase homolog 6 (.1) AT2G04430 262 / 2e-86 ATNUDT5 nudix hydrolase homolog 5 (.1) AT2G04440 149 / 2e-43 MutT/nudix family protein (.1) AT3G10620 44 / 9e-05 ATNUDX26 nudix hydrolase homolog 26 (.1) AT1G30110 42 / 0.0002 ATNUDX25 nudix hydrolase homolog 25 (.1.2) AT5G06340 42 / 0.0002 ATNUDX27 nudix hydrolase homolog 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G005400 [exp] 581 / 0 AT5G47650 347 / 7e-120 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G368000 [exp] 363 / 5e-126 AT5G47650 342 / 6e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.014G168400 [exp] 338 / 1e-115 AT5G47650 331 / 2e-113 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.005G077500 [exp] 337 / 1e-115 AT5G47650 322 / 2e-110 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.003G106100 [exp] 334 / 8e-115 AT5G47650 332 / 9e-115 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G127700 [exp] 323 / 1e-110 AT5G47650 323 / 1e-111 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G154300 [exp] 261 / 3e-85 AT5G47240 416 / 2e-145 nudix hydrolase homolog 8 (.1) Potri.003G080400 [exp] 260 / 2e-84 AT5G47240 401 / 1e-139 nudix hydrolase homolog 8 (.1) Potri.018G069100 [exp] 249 / 2e-80 AT5G47240 316 / 3e-106 nudix hydrolase homolog 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039079 [exp] 375 / 6e-130 AT5G47650 345 / 3e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10038780 [exp] 375 / 1e-129 AT5G47650 345 / 1e-118 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10012319 [exp] 300 / 2e-101 AT5G47650 310 / 4e-106 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10006365 [exp] 288 / 3e-96 AT4G12720 300 / 1e-101 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4) Lus10012320 [exp] 268 / 5e-89 AT5G47650 282 / 2e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10006366 [exp] 266 / 3e-88 AT5G47650 281 / 4e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10040169 [exp] 261 / 3e-85 AT5G47240 409 / 7e-143 nudix hydrolase homolog 8 (.1) Lus10004371 [exp] 266 / 6e-84 AT5G47240 410 / 2e-139 nudix hydrolase homolog 8 (.1) Lus10004195 [exp] 51 / 3e-07 AT5G06340 236 / 1e-78 nudix hydrolase homolog 27 (.1) Lus10021279 [exp] 50 / 9e-07 AT5G06340 253 / 1e-85 nudix hydrolase homolog 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [poplar] [flax] NUDIX PF00293 [poplar] [flax] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Potri.016G006000.1 pacid=42809162 polypeptide=Potri.016G006000.1.p locus=Potri.016G006000 ID=Potri.016G006000.1.v4.1 annot-version=v4.1 ATGATCAGATGCTTCTCTCCTCATTCATTCCTCTCTTCAGCAGTCATTTTTCCTCTCGGAAGAAATACCCTACAATCGTCAGCGGTGTGTAAAGTTCATT CCGTTTTAGTTTTTGGCATCTGGGTTAGAGCTAGAATTGCTGTTGGTGCAAGTTCAATGGCAGGTTTGGTGTGTTCAAAATCTGGAATGGAGCAAGTGTT GCTTGAGAATGAAGTGCAACAGGTTAAGTTGCTTGACTCTGTCAATGATGACTTTGGAGGTGTCATTGTGGAATTGAGCGAGGCTATGGATTTAAAGGTG TTTGCTTCAATGCTTAAAGCTTCAATTGCTTTATGGAGAAGTCAGAGTAAGAGGGGTGTTTGGATCAAAGTACCTATTCAACTGGTCAATCTTGTAGAAG CTGCTGTCAAGGAAGGGTTCTGGTTCCACCATGCAGAGCCAAAATACTTAATGCTTGCTTTCTGGATCCCTGAAGGTTCTCATACTCTTCCAGCGAATGC CTCTCACCGTGTGAGTATTGGTGCATTTGTCATGAACAAAAAGAGAGAGGTGCTTGTGGTCCAAGAGAAATGTGGCATATTTCGAGGGACAGGTATATGG AAGCTCCCTACTGGAGCTGTGGACGAGGGAGAAGACATATGTGCAGGTGCAATAAGAGAAGTCAAAGAAGAGACAGCAATTGATACGGAATTTGTGGAAG TACTAGCATTCTGGCAAAGCCACAAATCATTCTTTGGGAAGTCAGATTTATTCTTTGTATGCATGTTACGACCCCTCTCCTTTGACATCCAGAAGCAGGA GTCAGAAATAGAGGATGCTCAGTGGATGCCATGGGATGATTATGTAGCGCAGCCATTCGTCCAAAAGCATGAACTTTCGAAGCAGTTAGTTGACATATGC AAAGCAAAAGAAGATGAAACCTATTTTGGGTTTTCTCCGGTGCCCATCGCATCAAAACTTCCAGATCAGAAAAGCTTTCTGTACTTGAATGATCGAGACC TGGAAGGCAGTGAGGTCTGA
AA sequence Show only first row Show all	>Potri.016G006000.1 pacid=42809162 polypeptide=Potri.016G006000.1.p locus=Potri.016G006000 ID=Potri.016G006000.1.v4.1 annot-version=v4.1 MIRCFSPHSFLSSAVIFPLGRNTLQSSAVCKVHSVLVFGIWVRARIAVGASSMAGLVCSKSGMEQVLLENEVQQVKLLDSVNDDFGGVIVELSEAMDLKV FASMLKASIALWRSQSKRGVWIKVPIQLVNLVEAAVKEGFWFHHAEPKYLMLAFWIPEGSHTLPANASHRVSIGAFVMNKKREVLVVQEKCGIFRGTGIW KLPTGAVDEGEDICAGAIREVKEETAIDTEFVEVLAFWQSHKSFFGKSDLFFVCMLRPLSFDIQKQESEIEDAQWMPWDDYVAQPFVQKHELSKQLVDIC KAKEDETYFGFSPVPIASKLPDQKSFLYLNDRDLEGSEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.016G006000 [exp]	0	1
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G038700 [exp]	1.41	0.9291	Pt-ATCNGC19.3
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.004G197100 [exp]	2.00	0.9266
AT3G19553			Amino acid permease family pro...		Potri.001G296100 [exp]	3.00	0.9173
AT5G54110		ATMAMI	membrane-associated mannitol-i...		Potri.001G408200 [exp]	4.89	0.9045
AT3G23600			alpha/beta-Hydrolases superfam...		Potri.007G112700 [exp]	5.09	0.8947
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Potri.001G033200 [exp]	5.56	0.8755
AT3G13620			Amino acid permease family pro...		Potri.001G007200 [exp]	6.32	0.9006	PtrLAT1
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Potri.003G045200 [exp]	7.07	0.8848	IAR3.1
AT1G34300			lectin protein kinase family p...		Potri.010G103300 [exp]	7.41	0.9125
AT4G14090			UDP-Glycosyltransferase superf...		Potri.017G101800 [exp]	8.36	0.9052

Compare expression of checked genes

Potri.016G006000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.