Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47635 117 / 2e-33 Pollen Ole e 1 allergen and extensin family protein (.1) AT2G40113 103 / 4e-28 Pollen Ole e 1 allergen and extensin family protein (.1) AT4G17215 87 / 1e-21 Pollen Ole e 1 allergen and extensin family protein (.1) AT5G15780 47 / 2e-06 Pollen Ole e 1 allergen and extensin family protein (.1) AT2G41390 40 / 0.0002 Pollen Ole e 1 allergen and extensin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G005600 [exp] 322 / 2e-113 AT5G47635 120 / 8e-35 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.004G114300 [exp] 49 / 4e-07 AT5G15780 178 / 5e-52 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.017G100600 [exp] 48 / 2e-06 AT5G15780 173 / 1e-49 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.006G119100 [exp] 39 / 0.0008 AT3G09925 180 / 7e-58 Pollen Ole e 1 allergen and extensin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039078 [exp] 190 / 3e-61 AT5G47635 114 / 4e-32 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10038781 [exp] 184 / 6e-59 AT5G47635 113 / 2e-31 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10034365 [exp] 44 / 4e-05 AT5G15780 129 / 7e-34 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10005086 [exp] 42 / 0.0002 AT5G15780 133 / 5e-35 Pollen Ole e 1 allergen and extensin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0287 [poplar] [flax] Transthyretin PF01190 [poplar] [flax] Pollen_Ole_e_1 Pollen protein Ole e 1 like
Representative CDS sequence Show only first row Show all	>Potri.016G006200.1 pacid=42809763 polypeptide=Potri.016G006200.1.p locus=Potri.016G006200 ID=Potri.016G006200.1.v4.1 annot-version=v4.1 ATGAGCTACTTTAGCGGCTGCAACAATCTTACGATGATCACCAACTTCATTTCCACCGTCTTCATCATCTTCATCATCACCTTTCAAGCATCAATGGCCA AAGCAGAGAATCCATTGCAAGAGTTCTCAAATAGAGAAGAGTTGGTGCAATTGGCTGGTTATGGGGAGGAAAAGCTATCAACCGTGCTAGTCACAGGCAC GATTCTTTGTGAGGCTTGCTTGAATGGTGGAACTCAATTACTCCATGCATGGCCAGTATCAGGTGCTTTGGTATATGTGGAATGCCATACTGGTGTGAAG TGGAGCAAAACAACTTCTTCACAAGCCATGACAGACGAATATGGAGATTTCCTAATTGATCTACCTTCCCACCTCCATGGAATTCCGAACCTGGAAAGAA CATGTTCAGTTAAGGTTCTAAGATTGCCACAGAACTCGGTATGCAGACCAGCTCATGCCAGGAAACAGAAGGCACTGGAATTATCATCAGTTGGGAATGG CATCCGTAATTACAGTGCCGGGGAGATCAAATTTCTTCAAGTAACATCTAAACCTTTACAAGCATGCACCCAGAGAGGAAGCAGCGATAAGCAGATTGCG TACTAG
AA sequence Show only first row Show all	>Potri.016G006200.1 pacid=42809763 polypeptide=Potri.016G006200.1.p locus=Potri.016G006200 ID=Potri.016G006200.1.v4.1 annot-version=v4.1 MSYFSGCNNLTMITNFISTVFIIFIITFQASMAKAENPLQEFSNREELVQLAGYGEEKLSTVLVTGTILCEACLNGGTQLLHAWPVSGALVYVECHTGVK WSKTTSSQAMTDEYGDFLIDLPSHLHGIPNLERTCSVKVLRLPQNSVCRPAHARKQKALELSSVGNGIRNYSAGEIKFLQVTSKPLQACTQRGSSDKQIA Y

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47635			Pollen Ole e 1 allergen and ex...		Potri.016G006200 [exp]	0	1
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Potri.016G115300 [exp]	2.00	0.9003
AT5G22400			Rho GTPase activating protein ...		Potri.006G211200 [exp]	3.87	0.8955
AT5G47635			Pollen Ole e 1 allergen and ex...		Potri.006G005600 [exp]	4.00	0.8995
AT5G15790			RING/U-box superfamily protein...		Potri.003G161600 [exp]	4.47	0.8430
AT4G00755			F-box family protein (.1.2)		Potri.014G076300 [exp]	5.47	0.8701
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Potri.018G123100 [exp]	6.00	0.8636
AT2G40470	AS2	ASL11, LBD15	ASYMMETRIC LEAVES2-LIKE 11, LO...		Potri.013G156200 [exp]	7.48	0.8690
AT5G47530			Auxin-responsive family protei...		Potri.016G010900 [exp]	8.12	0.8338
AT3G57690		AGP23, ATAGP23	ARABINOGALACTAN-PROTEIN 23, ar...		Potri.016G052001 [exp]	8.36	0.8624
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.006G121400 [exp]	10.67	0.7998

Compare expression of checked genes

Potri.016G006200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.