Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16360 415 / 5e-148 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) AT5G21170 232 / 2e-75 AKINBETA1 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) AT2G28060 95 / 2e-24 5'-AMP-activated protein kinase beta-2 subunit protein (.1) AT1G09020 55 / 2e-08 ATSNF4, SNF4 homolog of yeast sucrose nonfermenting 4 (.1) AT1G27070 42 / 0.0003 5'-AMP-activated protein kinase-related (.1) AT3G01510 41 / 0.001 LSF1 like SEX4 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G005800 [exp] 527 / 0 AT4G16360 408 / 3e-145 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.001G220800 [exp] 254 / 4e-84 AT5G21170 316 / 1e-108 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Potri.009G021600 [exp] 253 / 7e-84 AT5G21170 319 / 1e-109 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Potri.014G167400 [exp] 247 / 4e-81 AT4G16360 206 / 2e-65 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.009G008700 [exp] 103 / 1e-27 AT2G28060 158 / 2e-51 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Potri.004G213600 [exp] 100 / 4e-26 AT2G28060 156 / 8e-51 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Potri.010G023500 [exp] 52 / 2e-07 AT1G09020 613 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.005G028800 [exp] 51 / 5e-07 AT1G09020 683 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Potri.013G020400 [exp] 48 / 3e-06 AT1G09020 715 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038783 [exp] 434 / 1e-154 AT4G16360 395 / 1e-139 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10039076 [exp] 433 / 3e-154 AT4G16360 392 / 2e-138 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10037424 [exp] 259 / 3e-86 AT5G21170 305 / 2e-104 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Lus10041287 [exp] 251 / 2e-82 AT5G21170 295 / 6e-100 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Lus10006390 [exp] 230 / 1e-74 AT4G16360 222 / 3e-72 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10012343 [exp] 217 / 1e-70 AT4G16360 220 / 1e-72 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10003355 [exp] 108 / 2e-29 AT2G28060 150 / 2e-48 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Lus10008427 [exp] 107 / 4e-29 AT2G28060 157 / 6e-51 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Lus10004490 [exp] 59 / 2e-09 AT1G09020 754 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10029909 [exp] 58 / 3e-09 AT1G09020 749 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04739 [poplar] [flax] AMPKBI 5'-AMP-activated protein kinase beta subunit, interaction domain CL0369 [poplar] [flax] GHD PF16561 [poplar] [flax] AMPK1_CBM Glycogen recognition site of AMP-activated protein kinase
Representative CDS sequence Show only first row Show all	>Potri.016G006400.1 pacid=42809508 polypeptide=Potri.016G006400.1.p locus=Potri.016G006400 ID=Potri.016G006400.1.v4.1 annot-version=v4.1 ATGGGGAATGTGAATGGAAGAGAAGAAGAAGGAGCAATCAGTCCATCAAGTGGTTGTGGTGGTGAAGGAGAAAGCCATAACAGCAGTGAGGTTATGGTTG CATCAGATGAGTCCCATGTTACATATCCTGCACCTCCTCCTGAAATGATGGGTCACTCACCTCCGCATAGCCCAAGAGCTACTCACTCACCTCTTATGTT CACTCCTCAGGTCCCGGTGGTTCCGTTGCAAAGACCTGATGAGATTCAAGTTCCAAGTCACTCATGGATGCAAAATTCTTTAGGGTATGAAGAAATGTGT AACGAGCAAGGAATTCCAACAATGATTACATGGACTTATGGTGGCAAGGAAGTAGCTGTTGAGGGATCATGGGATGACTGGAAAACAAGAATGCCTTTGC AAAGATCAGGAAAAGACTACACTATAATGAAAGTTCTGCCATCAGGTGTTTATCAATACAGGTTTATTGTTGATGGACAATGGAGGTATGCCCCTGACTT GCCCTGGGCCAAAGATGATTCTGGCAATGCTTACAATACTTTGGATTTGCAGGACTTTGTTCCAGAAGACCTTGAAAGTATATCTGGTTTTGAACCCCCT CATTCTCCAGAGTCAAGCTACAGCAACTTGCAACTTAGTAACGAGGATTTTGCGAAGGAGCCACCAATGGTTCCTCCGCACTTACAAATGACACTGCTCA ATGTGCCATCATCCTGCATGGAGATACCGCCTCCTTTGTCAAGACCTCAACATGTCGTGCTTAATCATCTCTACATGCAGAAGGGAAAGAGTGGGCCTGC TGTGGTGGCACTTGGTTCAACACACAGGTTCTTAGCCAAGTATGTGACTGTGGTGCTTTACAAGTCTTTGCAGAGGTAA
AA sequence Show only first row Show all	>Potri.016G006400.1 pacid=42809508 polypeptide=Potri.016G006400.1.p locus=Potri.016G006400 ID=Potri.016G006400.1.v4.1 annot-version=v4.1 MGNVNGREEEGAISPSSGCGGEGESHNSSEVMVASDESHVTYPAPPPEMMGHSPPHSPRATHSPLMFTPQVPVVPLQRPDEIQVPSHSWMQNSLGYEEMC NEQGIPTMITWTYGGKEVAVEGSWDDWKTRMPLQRSGKDYTIMKVLPSGVYQYRFIVDGQWRYAPDLPWAKDDSGNAYNTLDLQDFVPEDLESISGFEPP HSPESSYSNLQLSNEDFAKEPPMVPPHLQMTLLNVPSSCMEIPPPLSRPQHVVLNHLYMQKGKSGPAVVALGSTHRFLAKYVTVVLYKSLQR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16360			5'-AMP-activated protein kinas...		Potri.016G006400 [exp]	0	1
AT3G45770			Polyketide synthase, enoylredu...		Potri.001G233300 [exp]	2.00	0.7684
AT4G02980		ABP1	endoplasmic reticulum auxin bi...		Potri.002G212400 [exp]	12.80	0.7329
AT5G51720			2 iron, 2 sulfur cluster bindi...		Potri.015G132500 [exp]	17.74	0.7289
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Potri.017G056201 [exp]	20.78	0.7493
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Potri.004G122100 [exp]	23.10	0.7273
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Potri.011G001000 [exp]	23.43	0.7147	TOM1.1
AT4G24530			O-fucosyltransferase family pr...		Potri.002G105800 [exp]	27.92	0.7090
AT3G60340			alpha/beta-Hydrolases superfam...		Potri.003G080100 [exp]	30.75	0.6895
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Potri.001G171000 [exp]	34.89	0.7201	Pt-ATPDAT.2
AT5G59100			Subtilisin-like serine endopep...		Potri.009G037900 [exp]	36.93	0.7092

Compare expression of checked genes

Potri.016G006400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.