Plant FIBer expression Database

Potri.016G006500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G16370 1305 / 0 ATOPT3 oligopeptide transporter (.1)
AT5G64410 857 / 0 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1)
AT1G09930 853 / 0 ATOPT2 oligopeptide transporter 2 (.1)
AT4G10770 830 / 0 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1)
AT4G26590 811 / 0 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
AT4G27730 807 / 0 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1)
AT5G55930 772 / 0 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1)
AT5G53520 771 / 0 ATOPT8 oligopeptide transporter 8 (.1)
AT5G53510 753 / 0 ATOPT9 oligopeptide transporter 9 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G006000
[exp]
1426 / 0 AT4G16370 1284 / 0.0 oligopeptide transporter (.1)
Potri.009G079500
[exp]
872 / 0 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1)
Potri.005G150400
[exp]
847 / 0 AT5G64410 1106 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1)
Potri.002G109300
[exp]
838 / 0 AT1G09930 1114 / 0.0 oligopeptide transporter 2 (.1)
Potri.003G145500
[exp]
833 / 0 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1)
Potri.012G019700
[exp]
811 / 0 AT4G27730 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1)
Potri.007G056900
[exp]
806 / 0 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1)
Potri.012G019500
[exp]
796 / 0 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1)
Potri.001G369700
[exp]
781 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039075
[exp]
1291 / 0 AT4G16370 1304 / 0.0 oligopeptide transporter (.1)
Lus10038784
[exp]
1288 / 0 AT4G16370 1302 / 0.0 oligopeptide transporter (.1)
Lus10022372
[exp]
795 / 0 AT4G27730 1094 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1)
Lus10041897
[exp]
788 / 0 AT4G10770 1097 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1)
Lus10006581
[exp]
783 / 0 AT4G10770 1260 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1)
Lus10022543
[exp]
767 / 0 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Lus10022541
[exp]
762 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Lus10032585
[exp]
761 / 0 AT4G26590 1020 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Lus10022544
[exp]
759 / 0 AT4G26590 1079 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
Lus10032586
[exp]
757 / 0 AT4G26590 1004 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03169 OPT OPT oligopeptide transporter protein
Representative CDS sequence
>Potri.016G006500.1 pacid=42809008 polypeptide=Potri.016G006500.1.p locus=Potri.016G006500 ID=Potri.016G006500.1.v4.1 annot-version=v4.1
ATGGCAAGTCAAGAGAGTACTGATGGAAGACACACAAATGGGTTGCGGTTAGATTCATCTGCAGAACATCATGAAAGATGTCCTGTTGAAGAAGTGGCTT
TAGTTGTGCCTGAAACTGACGATCCAACACTTCCTGTCTTGACTTTTCGTGCATGGTTTCTGGGTTTAACTTCATGCGTAATACTTATCTTCTTGAACAC
TTTTTTCACTTACCGTACACAGCCACTTACTATCTCTGCCATTCTTATGCAAATTGCTGTGTTGCCTGTTGGCAAGTTCATGGCTAAGACTTTGCCTACG
AAAGATTATAGGATTTTGGGGTGGAGTTTTAGTTTGAATCCAGGGCCTTTTAATATGAAAGAACATGTGATTATCACTATTTTTGCGAACTGTGGTGTCT
CTTATGGTGGTGGTGATGCTTATTCTATTGGTGCCATTACTGTTATGAAGGCTTATTATAGGCAGAGTTTGAGTTTTCTTTGTGGGCTGCTCATAGTCTT
GACTACTCAGATATTGGGATATGGATGGGCTGGGATGCTAAGGAGATACCTGGTTTATCCTGTAGAGATGTGGTGGCCTTCCAATCTAGCTCAGGTTTCT
CTGTTCAGAGCACTGCATGAAAAGGAGCCGCAAAGTAAAGGCATGACAAGGATGCGATTCTTCCTCATTGCCATGACAGTAAGCTTTTTCTATTACGCAG
TCCCTGGTTACTTGTTCCCAATCTTGACATTCTTCTCGTGGGTCTGCTGGGCATGGCCTCACAACATGACAGCTCAACAAATAGGGTCAGGATACCATGG
TCTTGGTGTTGGTGCCTTCACTCTTGATTGGGCTGGGATTTCGGCCTACCATGGCAGCCCCCTTGTTGCTCCTTGGTCTTCCATTGTCAATGTTGCGGTT
GGCTTTATTATGTTCATCTACGTTATAGTCCCTGTGTGTTATTGGAAGTATAACACTTTTGATGCTCGGAAGTTTCCAATATTTTCTAATCAGCTGTTCA
CTTCTAGTGGGCAAAAATATGATACTACAAAGATCCTGACCCCAGAATTTCAACTTAACATTCCTGCTTATGATAGCTACAGCAAGCTTTATCTTAGTCC
TCTATTTGCCTTGTCGATTGGATCAGGATTTGCAAGGTTCACGGCAACTCTCACCCATGTGGCACTGTTTAATGGAAGGGATATTTGGAAGCAAAGTAGG
AAAGCAATGCAGAATGTGAAATTGGATGTTCATGCAAAATTGATGAAAGCTTACAAAGAAGTTCCCGACTGGTGGTTCTATATTCTGTTAGCAGGGAGTG
TTTTCCTCTCATTGTTAATGTCTTTTGTTTGGAAAGAAACTGTGCAGCTGCCGTGGTGGGGTATGCTCTTTGCCTTTGGCTTGGCTTGGCTTGTTACCCT
TCCTATTGGGGTTATTCAAGCAACTACCAACCAGCAACCTGGCTACGACATAATAGCACAGTTCATGATTGGATATGTCCTACCAGGACAACCAATTGCA
AACCTGCTTTTCAAGATTTATGGACGAATCAGCACGGTCCATGCTCTTTCTTTCTTATCTGACCTTAAACTTGGACACTACATGAAAATTCCACCACGGT
GCATGTATGTAGCTCAGCTTGTGGGAACTTTAGTTGCCGGTACAGTCAATCTTGCAGTTGCGTGGTGGATGTTGGAGAACATTGAAAATATCTGTGATGT
TGATTCGCAAGATTCCAACAGTCCTTGGACGTGTCCTAAGTACCGAGTTACTTTTGATGCTTCTGTAATCTGGGGCCTCATTGGACCAAAAAGGCTCTTC
GGACCTGGTGGCCTCTACAGGAACTTGGTATGGCTGTTCCTCATTGGAGCTTTCTTGCCGGTGCCTTTTTGGGTACTGAGCAAAATGTTCCCTGAAAAGA
AATGGATTGCATTGATAAACATTCCAGTTATATCTTATGGTTTTGCCGGAATGCCACCCTCTACTCCCACCAACATTGCAAGCTGGCTTATCACTGGAAC
CATCTTCAACTACTTTGTCTTCCGATATCGCAAGCGCTGGTGGCAGAAGTATAATTATGTTCTGTCTGCGGCATTGGATGCTGGGACAGCTTTCATGGGT
GTTCTATTGTTCTTTGCTGTGCAGAACACAGACAAAAAATTGAGTTGGTGGGGTGCAGAACTTGATCACTGTCCTTTGGCTACATGTCCAACAGCGCCAG
GAATTGTGGTTAAGGGATGCCCTGTCTTTTGA
AA sequence
>Potri.016G006500.1 pacid=42809008 polypeptide=Potri.016G006500.1.p locus=Potri.016G006500 ID=Potri.016G006500.1.v4.1 annot-version=v4.1
MASQESTDGRHTNGLRLDSSAEHHERCPVEEVALVVPETDDPTLPVLTFRAWFLGLTSCVILIFLNTFFTYRTQPLTISAILMQIAVLPVGKFMAKTLPT
KDYRILGWSFSLNPGPFNMKEHVIITIFANCGVSYGGGDAYSIGAITVMKAYYRQSLSFLCGLLIVLTTQILGYGWAGMLRRYLVYPVEMWWPSNLAQVS
LFRALHEKEPQSKGMTRMRFFLIAMTVSFFYYAVPGYLFPILTFFSWVCWAWPHNMTAQQIGSGYHGLGVGAFTLDWAGISAYHGSPLVAPWSSIVNVAV
GFIMFIYVIVPVCYWKYNTFDARKFPIFSNQLFTSSGQKYDTTKILTPEFQLNIPAYDSYSKLYLSPLFALSIGSGFARFTATLTHVALFNGRDIWKQSR
KAMQNVKLDVHAKLMKAYKEVPDWWFYILLAGSVFLSLLMSFVWKETVQLPWWGMLFAFGLAWLVTLPIGVIQATTNQQPGYDIIAQFMIGYVLPGQPIA
NLLFKIYGRISTVHALSFLSDLKLGHYMKIPPRCMYVAQLVGTLVAGTVNLAVAWWMLENIENICDVDSQDSNSPWTCPKYRVTFDASVIWGLIGPKRLF
GPGGLYRNLVWLFLIGAFLPVPFWVLSKMFPEKKWIALINIPVISYGFAGMPPSTPTNIASWLITGTIFNYFVFRYRKRWWQKYNYVLSAALDAGTAFMG
VLLFFAVQNTDKKLSWWGAELDHCPLATCPTAPGIVVKGCPVF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G16370 ATOPT3 oligopeptide transporter (.1) Potri.016G006500
[exp]
0 1

Potri.016G006500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.