Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16390 916 / 0 SVR7 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) AT5G46580 460 / 9e-153 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G31400 177 / 2e-46 GUN1 genomes uncoupled 1 (.1) AT1G74750 173 / 6e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18900 154 / 8e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT4G31850 141 / 2e-34 PGR3 proton gradient regulation 3 (.1) AT4G20090 138 / 7e-34 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G02860 138 / 1e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74850 138 / 2e-33 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT2G02150 135 / 8e-33 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G019000 [exp] 1195 / 0 AT4G16390 939 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G018600 [exp] 1069 / 0 AT4G16390 818 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.003G089600 [exp] 477 / 2e-159 AT5G46580 986 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.014G118500 [exp] 169 / 7e-44 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.015G066400 [exp] 167 / 6e-43 AT1G18900 1107 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Potri.002G193900 [exp] 165 / 2e-42 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.006G166200 [exp] 154 / 7e-39 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G264800 [exp] 144 / 2e-35 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.013G034200 [exp] 137 / 8e-34 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038788 [exp] 860 / 0 AT4G16390 802 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10039071 [exp] 853 / 0 AT4G16390 808 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10004555 [exp] 442 / 8e-146 AT5G46580 960 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10000897 [exp] 432 / 8e-142 AT5G46580 945 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10033110 [exp] 160 / 1e-40 AT1G18900 1091 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Lus10003424 [exp] 154 / 1e-38 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10026884 [exp] 146 / 1e-36 AT4G31850 746 / 0.0 proton gradient regulation 3 (.1) Lus10013894 [exp] 147 / 3e-36 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 144 / 9e-36 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018318 [exp] 140 / 2e-34 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.016G006800.1 pacid=42809066 polypeptide=Potri.016G006800.1.p locus=Potri.016G006800 ID=Potri.016G006800.1.v4.1 annot-version=v4.1 ATGGCATACAACCTCTGCTCTTCACCTTCTTCTCTCTACCAACCTCTCTGCAACACTCTCTCATCTTCTTCGAGAGACTCAAAACCAAGAACCTTAAACA ACAACTTCTACCATTCTTTGAAGCTCAACACTCCCTCACCTCAATCAAGGACAACCTCACTTCAGATCACCAATGTCTCATTACAAGACCAAAAAATCCC ACAGCAAGAAACCTCAAAAGATTCAAACTTTAATGAAAAAAATGGGTCCTCATCAAAATCCTACATCTGGGTCAACCCCAAAAGCTCTAAAGCTTCAACT CTCAGAAAAAGTTCCTATGATGCTAGGTATGCTTCTCTTATTAAAGCTGCTAAGTCTTTGAATTCTTGTAACCCAAATAAAGACGATGTCTTTAATATCT TGGGTGAGTTTGGCAACAAATTGTTTGAGCATGATGCTGTTGTTATTCTTAATAACATGTCGAATCCAGACACTGCTTTGTTAGCATTAAAGTTTTTCCG AGAGAGGTTGGAGTTTAATAGAGAGGTTGTTGTTTATAATGTGACTATGAAGGTTTTGAGAAAGTGTAGGGATTTGAATAAGGTAGAGAAGCTGTTTGAT GAAATGATTGAGAGAGCTGTGAAGCCTGATAATGTTACGTTTTCAACGATAATTAGTTGCGCTAGGTTGTGTAATTTGGCTGATAAGGCGGTCGAGTGGT TTGAGAAAATGCCAAGTTTTGGACTTGATCCTGATGATGTTACTTTTTCGACTATGATTGATTCGTATGGGCGAGTTGGTAATGTTGAAAAGGCATTGAG CTTGTATGACCGTGCTAGAACCGAGAAGTGGCGTCTGGATACAACCACATTCTCAACGTTGATTAGGATTTATAAGGATTCTGGGAATTTTGATTGTTGT TTGAACGTTTATGAAGAAATGAAGGCTTTAGGTGTTAAACCAAATTTGGTCATATATAACACTTTGTTGGATGCCATGGGAAGAGCTAGGAGGCCTTGGC AGGCGAAGAAATTTTATCAGGATATAATTGACAGTGGGTTGTCACCTAGTTATGCGACATATGCAGCTCTTTTACGTGCATATGGTAGAGCTCGTTATGG AGAAGATACAATTAAGATTTATAAGGAAATGAAGGAAAAGGAGTTGAGTTTGAATGTACTTCTTTATAATACCATATTGGCTATGTGTGCTGATCTTGGC TTTGTTGATGAAGCTATTGAGATTTTTGAGGACATGAAGAATTCTGGGATCAGTCCTGATAGTTGGACCTTCTCGTCTATGATTACCATGTCCTCATGCT GTGGGAAAGTGTCTGAGGCAGAGAATATGCTGAATGAGATGTTTGAAGCAGGCTTTCAGCCTAATATCTTTGTCTTGACTTCACTTATCCAGTGCTATGG CAAAGCCCAACGCATTGATGATGTTGTGAAGACATTTAACCGACTTTATGAATTGCTTATAACTCCAGATGATCGGTTCTGTGGCTGTCTTTTGAATGTG ATGACTCAAACACCAAATGAAGAACTTGGCAAACTTGTTGATTGTGTTGAGAGGGCTAATCCAAAGCTTGGTCATGTGGTAAAACTTTTGGTAGAGGAGC AAGGCAATGAAGGGAATTTTAAGAAGGAAGCTGCCGATCTGTTTGATAATATTAGCACTGAAGTAAAGAAAGCGTACTGCAATTGCTTAATTGACCTCTG TGTCAAACTCAATATGTTGGAGAGAGCTTGTGAATTGCTAGACCATGGATTAACACTTGGAATTTACACAGATATACAGTCCAAAACGTCAACCCAGTGG TCTTTAAATCTAAAAAGTCTCTCTTCCGGGGCAGCACTGACAGCATTACATGTTTGGATAAATGACTTGTCTAAGGCATTGGAAGCGGGGGAGCAGCTTC CTCCGTTGCTTGGAATCAATACCGGGCATGGGAAACACAAGTATTCAGAGAAAGGTTTAGCCAATGTGTTCGAGTCACATTTGAAGGAACTAAATGCTCC ATTCCATGAGGCTCCTGATAAGGTTGGCTGGTTCTTAACTACAAAGGTTGCAGCTGAGTCATGGTTAGAATCTAGAAAATTAGCTGATGCAGTAGCTGCA TAG
AA sequence Show only first row Show all	>Potri.016G006800.1 pacid=42809066 polypeptide=Potri.016G006800.1.p locus=Potri.016G006800 ID=Potri.016G006800.1.v4.1 annot-version=v4.1 MAYNLCSSPSSLYQPLCNTLSSSSRDSKPRTLNNNFYHSLKLNTPSPQSRTTSLQITNVSLQDQKIPQQETSKDSNFNEKNGSSSKSYIWVNPKSSKAST LRKSSYDARYASLIKAAKSLNSCNPNKDDVFNILGEFGNKLFEHDAVVILNNMSNPDTALLALKFFRERLEFNREVVVYNVTMKVLRKCRDLNKVEKLFD EMIERAVKPDNVTFSTIISCARLCNLADKAVEWFEKMPSFGLDPDDVTFSTMIDSYGRVGNVEKALSLYDRARTEKWRLDTTTFSTLIRIYKDSGNFDCC LNVYEEMKALGVKPNLVIYNTLLDAMGRARRPWQAKKFYQDIIDSGLSPSYATYAALLRAYGRARYGEDTIKIYKEMKEKELSLNVLLYNTILAMCADLG FVDEAIEIFEDMKNSGISPDSWTFSSMITMSSCCGKVSEAENMLNEMFEAGFQPNIFVLTSLIQCYGKAQRIDDVVKTFNRLYELLITPDDRFCGCLLNV MTQTPNEELGKLVDCVERANPKLGHVVKLLVEEQGNEGNFKKEAADLFDNISTEVKKAYCNCLIDLCVKLNMLERACELLDHGLTLGIYTDIQSKTSTQW SLNLKSLSSGAALTALHVWINDLSKALEAGEQLPPLLGINTGHGKHKYSEKGLANVFESHLKELNAPFHEAPDKVGWFLTTKVAAESWLESRKLADAVAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16390		SVR7	suppressor of variegation 7, p...		Potri.016G006800 [exp]	0	1
AT5G11270		OCP3	overexpressor of cationic pero...		Potri.006G251700 [exp]	1.00	0.9842
AT4G21190		EMB1417	embryo defective 1417, Pentatr...		Potri.017G148700 [exp]	4.00	0.9655
AT1G02150			Tetratricopeptide repeat (TPR)...		Potri.014G050300 [exp]	4.69	0.9747
AT1G69200		FLN2	fructokinase-like 2 (.1)		Potri.008G097300 [exp]	5.74	0.9716
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Potri.010G153900 [exp]	7.74	0.9667
AT1G35420			alpha/beta-Hydrolases superfam...		Potri.019G079000 [exp]	7.74	0.9686
AT5G62840			Phosphoglycerate mutase family...		Potri.015G074700 [exp]	8.06	0.9635
AT4G13670		PTAC5	plastid transcriptionally acti...		Potri.001G049900 [exp]	8.24	0.9706
AT5G22340			unknown protein		Potri.009G160500 [exp]	10.09	0.9632
AT4G27700			Rhodanese/Cell cycle control p...		Potri.015G008000 [exp]	10.24	0.9664

Compare expression of checked genes

Potri.016G006800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.