Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17220 455 / 2e-155 ATMAP70-5 microtubule-associated proteins 70-5 (.1) AT1G24764 396 / 6e-131 ATMAP70-2 microtubule-associated proteins 70-2 (.1) AT1G14840 390 / 5e-129 ATMAP70-4 microtubule-associated proteins 70-4 (.1.2) AT1G68060 382 / 1e-125 ATMAP70-1 microtubule-associated proteins 70-1 (.1) AT2G01750 376 / 5e-123 ATMAP70-3 microtubule-associated proteins 70-3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G018000 [exp] 806 / 0 AT4G17220 464 / 5e-159 microtubule-associated proteins 70-5 (.1) Potri.008G135100 [exp] 392 / 2e-129 AT1G24764 804 / 0.0 microtubule-associated proteins 70-2 (.1) Potri.010G106100 [exp] 391 / 4e-129 AT1G68060 751 / 0.0 microtubule-associated proteins 70-1 (.1) Potri.016G036300 [exp] 390 / 1e-128 AT1G68060 619 / 0.0 microtubule-associated proteins 70-1 (.1) Potri.006G039200 [exp] 381 / 3e-125 AT1G24764 648 / 0.0 microtubule-associated proteins 70-2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038790 [exp] 512 / 3e-177 AT4G17220 473 / 5e-163 microtubule-associated proteins 70-5 (.1) Lus10013238 [exp] 390 / 2e-128 AT1G24764 910 / 0.0 microtubule-associated proteins 70-2 (.1) Lus10030758 [exp] 389 / 3e-128 AT1G24764 918 / 0.0 microtubule-associated proteins 70-2 (.1) Lus10019171 [exp] 231 / 1e-69 AT1G24764 546 / 0.0 microtubule-associated proteins 70-2 (.1) Lus10000642 [exp] 174 / 4e-49 AT1G24764 403 / 1e-136 microtubule-associated proteins 70-2 (.1) Lus10039069 [exp] 99 / 2e-24 AT1G24764 71 / 8e-16 microtubule-associated proteins 70-2 (.1) Lus10003908 [exp] 79 / 1e-17 AT4G17220 98 / 3e-25 microtubule-associated proteins 70-5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07058 [poplar] [flax] MAP70 Microtubule-associated protein 70
Representative CDS sequence Show only first row Show all	>Potri.016G006900.3 pacid=42809250 polypeptide=Potri.016G006900.3.p locus=Potri.016G006900 ID=Potri.016G006900.3.v4.1 annot-version=v4.1 ATGGTGGGGTATTGTAATGAGGAACAATTTCTAGGAAGAGAGGATCTCTCCCTTTCTCACCCTGGCCCTATTGTCCTAGAGCTCAACCGTTTGCAGAACC TTCTCAAAGAGAGGGAGAGAGAGCTAGGTTCTGCACAAGGAGAAATTAAGGCTTTGAGGGCAACTGAAGCTTTGAAGGATAAGGCTATCGAAGAGCTCAG GAATGAAGTTGGTAAACTGGATCAGAAACTTGGTGTCACAGAAAATCTTGTAGAACACAAGAATCTTGAAATCAAGAAGCTTACAAATGAAAAGAAAGAT GCATTAGCAGCACAATACGCTGCAGAAGCAATTCTTAGAAGGGTCCATGCAAATCAGAAGGGTGATGATTCTCCTCCTATTGAGTCAGTCATTGCTCCAC TTGAGGCTGAGATTAAAATGTATAAAAATGAGATTGCGTCGCTGCAGGAGGATAAGAAGGCGATGGAACGTCTCACCAAGTCAAAAGAGTCGGCTCTGCT TGAAGCAGAGAGGATCTTACGGAGTGCTCTAGAAAGGGCTTTAATAGTTGAGGAGGTTCAGAACCAAAACTACGAGTTAAAGAGACAGATTGAAATCTGC CAGGAGGAGAACAGAATTCTAGAGAAGACAAATCGCCAAAAAGTTTTAGAGGTTGAAAAGCTTAGCCAAACCATTTGTGAGCTTGAGGAAGCCATTCTAG CTGCTGGAGCTGCAGCCAATACTATTCGTGACTATCGAAGACAGATTTCTGAACTAAAAGAGGAGAAGAGGATGCTGGAGAGGGAGCTAGCCAGAGCCAG AGTTTCAGCAAACCGAGTTGCAACGGTGGTGGCTAACGAGTGGAAGGATGAAAATGACAAGGTCATGCCTGTCAAGCAATGGCTTGAAGAGAGAAGGCTG CTGCAGGCGGAGATGCAAAGACTAAAAGAGAAGCTAGCTATATCAGAGAGAACAGCCAATGCAGAAGCACAACTGAAGGAAAAAATGAAGCTGAGGCTAA ACACATTGGAAGAGGGCTTAAAACACACATCAAGTTTCTCTGCAAACCCTAATGCATCCTGTGGATCCCCTAAACCAGGAAACACCAATAAGATACTAGG ATTTCTAAAAAGCAATGCAGGGATGAGAAGGAGATCTACATCACAACCAAGGGGATCCAGCATCAATAGAAACTCCCCTCTCCAGCAGCCAAATATAGAA ACTGAAAATGCAAATGCTTCTGGGAAACTAAATGGAGCTGATAGTTTCAAAAAGAAGTATGGTTCTGGAGAAAACATGTTGACAAAAGGTATATGGGTAT CTAGAAACAAAGTTATTGATATCAGCGGAAAGGAAAATGAAGAAGTTAAGACAAAAGCCGATTCCTGTATCGATAAACACGGGATTGATGGCACGACAAA TTCAGAAGAAACAAAGAACAAAGTTAGTGGAAATGAAGACTTGCCAAACAAGGGAAGTGCCAATTCTGATAGTCAAGATGTTGTTTCAGGATTTCTATAT GATAGGCTTCAAAAGGCGGTCATAAATCTACAAAAATCTTGTGAGACTAAAGAGAGGATTTTGAATGCTAAAGATCAAGAAATTCAGATGCTCATGAAGA AGGTTAATGCACTAACAAAATCCATTGAAGTAGAGTCCAAGAAAGTGAAGAGAGAAGCAGCAGCTAGAGAAAAAGAAGCTGCATCTGCAAAACTGAACAA ACCAAAAAGATTTGGAGCATAA
AA sequence Show only first row Show all	>Potri.016G006900.3 pacid=42809250 polypeptide=Potri.016G006900.3.p locus=Potri.016G006900 ID=Potri.016G006900.3.v4.1 annot-version=v4.1 MVGYCNEEQFLGREDLSLSHPGPIVLELNRLQNLLKERERELGSAQGEIKALRATEALKDKAIEELRNEVGKLDQKLGVTENLVEHKNLEIKKLTNEKKD ALAAQYAAEAILRRVHANQKGDDSPPIESVIAPLEAEIKMYKNEIASLQEDKKAMERLTKSKESALLEAERILRSALERALIVEEVQNQNYELKRQIEIC QEENRILEKTNRQKVLEVEKLSQTICELEEAILAAGAAANTIRDYRRQISELKEEKRMLERELARARVSANRVATVVANEWKDENDKVMPVKQWLEERRL LQAEMQRLKEKLAISERTANAEAQLKEKMKLRLNTLEEGLKHTSSFSANPNASCGSPKPGNTNKILGFLKSNAGMRRRSTSQPRGSSINRNSPLQQPNIE TENANASGKLNGADSFKKKYGSGENMLTKGIWVSRNKVIDISGKENEEVKTKADSCIDKHGIDGTTNSEETKNKVSGNEDLPNKGSANSDSQDVVSGFLY DRLQKAVINLQKSCETKERILNAKDQEIQMLMKKVNALTKSIEVESKKVKREAAAREKEAASAKLNKPKRFGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17220		ATMAP70-5	microtubule-associated protein...		Potri.016G006900 [exp]	0	1
AT4G17220		ATMAP70-5	microtubule-associated protein...		Potri.006G018000 [exp]	1.41	0.9205
AT5G23750			Remorin family protein (.1.2)		Potri.003G124400 [exp]	2.00	0.8917
AT1G13340			Regulator of Vps4 activity in ...		Potri.010G127000 [exp]	3.00	0.8897
AT5G24090		ATCHIA	chitinase A (.1)		Potri.014G092932 [exp]	3.74	0.8729
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Potri.015G100102 [exp]	7.74	0.8794
AT2G38060		PHT4;2	phosphate transporter 4;2 (.1)		Potri.016G111000 [exp]	8.06	0.8801
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.004G007600 [exp]	8.24	0.8877
AT3G60520			unknown protein		Potri.002G142600 [exp]	9.00	0.7565
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Potri.004G020650 [exp]	10.48	0.7783
AT5G05960			Bifunctional inhibitor/lipid-t...		Potri.010G196300 [exp]	11.48	0.8498

Compare expression of checked genes

Potri.016G006900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.