Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28530 820 / 0 FAR1_related FRS10 FAR1-related sequence 10 (.1) AT1G10240 528 / 7e-180 FAR1_related FRS11 FAR1-related sequence 11 (.1) AT4G38180 251 / 7e-73 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT4G15090 218 / 1e-60 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) AT2G27110 211 / 4e-58 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.3) AT3G22170 191 / 3e-51 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT5G18960 182 / 2e-48 FAR1_related FRS12 FAR1-related sequence 12 (.1) AT1G76320 181 / 5e-48 FAR1_related FRS4 FAR1-related sequence 4 (.1.2) AT3G06250 176 / 2e-46 FAR1_related FRS7 FAR1-related sequence 7 (.1) AT1G52520 154 / 4e-39 FAR1_related FRS6 FAR1-related sequence 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G167000 [exp] 926 / 0 AT5G28530 966 / 0.0 FAR1-related sequence 10 (.1) Potri.004G227600 [exp] 521 / 3e-177 AT1G10240 1199 / 0.0 FAR1-related sequence 11 (.1) Potri.002G199300 [exp] 491 / 1e-164 AT1G10240 825 / 0.0 FAR1-related sequence 11 (.1) Potri.008G108800 [exp] 468 / 2e-155 AT1G10240 788 / 0.0 FAR1-related sequence 11 (.1) Potri.T171101 [exp] 468 / 2e-155 AT1G10240 789 / 0.0 FAR1-related sequence 11 (.1) Potri.004G209000 [exp] 252 / 3e-73 AT4G38180 1163 / 0.0 FAR1-related sequence 5 (.1) Potri.009G170100 [exp] 241 / 3e-69 AT4G38180 1145 / 0.0 FAR1-related sequence 5 (.1) Potri.011G145800 [exp] 240 / 1e-68 AT4G38180 1003 / 0.0 FAR1-related sequence 5 (.1) Potri.005G257600 [exp] 238 / 3e-68 AT4G38180 891 / 0.0 FAR1-related sequence 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031825 [exp] 153 / 2e-39 AT1G76320 656 / 0.0 FAR1-related sequence 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03101 [poplar] [flax] FAR1 FAR1 DNA-binding domain CL0274 [poplar] [flax] PF04434 [poplar] [flax] SWIM SWIM zinc finger CL0219 [poplar] [flax] RNase_H PF10551 [poplar] [flax] MULE MULE transposase domain
Representative CDS sequence Show only first row Show all	>Potri.016G007300.2 pacid=42809504 polypeptide=Potri.016G007300.2.p locus=Potri.016G007300 ID=Potri.016G007300.2.v4.1 annot-version=v4.1 ATGACATCTGTGCCGTCGAAAAATATATGGATAAAGAGGCAGCAATGCCCATGTGGGGATTGGAAATGTTATGTTACTTGTGAAGGAGATGTTGAAGAGA CATCTGTAGCATCTCAGTTGGAAAAAAATGAAAATTTTCAATCTGATTCAATGGTTTCTCCTTATGTAGGAATGGTGTTTAAGAGTGATGATGATGCGTT CGAGTATTATGGGAATTTTGCTAGGAAAAATGGGTTTTCTATTAGGAAAGAGAGGTCAAGATTGAGCCCTCAATTGGGTATTTATAAACGTGATTTTGTT TGTTATCGTTCGGGGTTTGCGCCGGCTAGGAAGAAGTCGACTGCAGAACACCATAGGGATAGGAAATCGGTGCGGTGTGGATGTGATGCAAAAATGTATT TGTCAAAGGAAGTTGTTGAAGGGGTTTCTCAATGGTTTGTTGTGCAATTTAGCAATGTGCATAATCATGAGCTCTTGGAAGATGATCAAGTGAGGCTCCT TCCAGCTTATCGGAAGATTCAAGAGGCGGATCAGGAGAGGATTCTTTTGCTTTCAAAAGCTGGGTTCCCAATACATCGAATAGTGAAGGTGTTAGAGTTG GAAAAGGGTATTCAAGGTGGGCAATTGCCTTTTCTAGAGAGGGATGTTAGGAATTTTGTTCAAAATCGCAAGAAGATTGTTCAAGAGAATGATGCTTTGC TCACTGAAAAGAGAGAGAATGATAGTATGGAACTTCTTGAGGCGTGCAAAGTTACCAAAGAGATGGATGGAGATTTTGTTTATGATTTCACAACGGATGA GAATGATAAGGTTGAGAACATTGTGTGGTCGTATGGTGACTCTGTTCGTGCATACACTTTGTTTGGTGATGTGGTTTATTTTGACACTAGTTATCGTTCT ATCACATATGGCATGCTTTTAGGGGTATGGCTTGGAATTGACAACAATGGGAAGACCATATTCTTTGGCTGTGTTCTGTTGCAGGATGAGACGGCTCGTT CCTTTGCATGGGCTTTGCAGGCTTTTGTCCATCTTATGAAAGGAAAATGTCCACAAACAATTCTAACTGACCTTGAACTGGGGCTTAAGGATGCTGTTAG AAGCGAATTACCTAGCACTAGACACGTTATATCTATATGGAATATTCAACCCAAGATATCCAGTTGGTTTTTCCTTTCCCTTGGGGCTAGATATCCAGAA TTTAAATCGATGTTTGATGATTTGTATCATGCTGAGAATGCAGATGATTTTGAACATAGATGGAGTCAGATGGTTTCTATGTTTGGATTTGGTTCAGATA AACACATTGCTTTACTCTATTCTCTTCGTGCATCCTGGGCATCATCCTATATGAGAGGTTACTTTCTTGCTCGGATGGCGACATCAGCATATTTGAAATC TGTAGAGTCATTTCTGAAAGCAATCTGTTGTGCACAAACATGTTTACGGAGCTTCTTTGAACAGGTTGGTAGTTCCTCCAATTTCCAGAACCAGCTACGT CAAGAGATGCAGTACATGCTCACTAAAACATGCATGCCTATTGAAGAGCATGCACGTAATTTTCTTACACCTTTTGCCTTCAATGATTTCCAACATGAAT TGGTGCTCTCTATGCAATGTGCTCTGTCTGAAATGCCGGATGGATCATATCTTGTACACCACTACAAAAAGATGGATGTTGAGCGGCTTGTAATATGGAT ACCAGAAGATGAACAGATTCACTGCACCTGTAAGGAATTTGAGTCTTCCGGGATGTTGTGCAGACACACTCTTCGGGTGTTCATCCTGAAAAACTACTTT CAGCTTCCTGAAAAATATTATCTTAGCAGATGGCGAAGGGAAAGCTCCCTAGTTTTCTATGATAATCAAGATACTCAAACTAATGATGATGGATGGTTTC AAGAATTTCAATCCCTGACTGAAACTCTATTAACAGAGTCATCAATCACAAAGGAGCGTTCTGATTATGTCCATAGGGAACTGCCAAAGGAACTGAAAAG ACTTATTAGTGAGGTTAGAAAAATGCCAGAAAGTGATGGAGCTGCTATGGATTTAACACTTTCACCATCTAGTTAA
AA sequence Show only first row Show all	>Potri.016G007300.2 pacid=42809504 polypeptide=Potri.016G007300.2.p locus=Potri.016G007300 ID=Potri.016G007300.2.v4.1 annot-version=v4.1 MTSVPSKNIWIKRQQCPCGDWKCYVTCEGDVEETSVASQLEKNENFQSDSMVSPYVGMVFKSDDDAFEYYGNFARKNGFSIRKERSRLSPQLGIYKRDFV CYRSGFAPARKKSTAEHHRDRKSVRCGCDAKMYLSKEVVEGVSQWFVVQFSNVHNHELLEDDQVRLLPAYRKIQEADQERILLLSKAGFPIHRIVKVLEL EKGIQGGQLPFLERDVRNFVQNRKKIVQENDALLTEKRENDSMELLEACKVTKEMDGDFVYDFTTDENDKVENIVWSYGDSVRAYTLFGDVVYFDTSYRS ITYGMLLGVWLGIDNNGKTIFFGCVLLQDETARSFAWALQAFVHLMKGKCPQTILTDLELGLKDAVRSELPSTRHVISIWNIQPKISSWFFLSLGARYPE FKSMFDDLYHAENADDFEHRWSQMVSMFGFGSDKHIALLYSLRASWASSYMRGYFLARMATSAYLKSVESFLKAICCAQTCLRSFFEQVGSSSNFQNQLR QEMQYMLTKTCMPIEEHARNFLTPFAFNDFQHELVLSMQCALSEMPDGSYLVHHYKKMDVERLVIWIPEDEQIHCTCKEFESSGMLCRHTLRVFILKNYF QLPEKYYLSRWRRESSLVFYDNQDTQTNDDGWFQEFQSLTETLLTESSITKERSDYVHRELPKELKRLISEVRKMPESDGAAMDLTLSPSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G28530	FAR1_related	FRS10	FAR1-related sequence 10 (.1)		Potri.016G007300 [exp]	0	1
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Potri.013G041201 [exp]	2.23	0.8493
AT5G09860		AtTHO1, AtHPR1	nuclear matrix protein-related...		Potri.001G031700 [exp]	4.00	0.8265
AT1G60220		ULP1D, OTS1	OVERLY TOLERANT TO SALT 1, UB-...		Potri.010G040600 [exp]	7.21	0.8381
AT1G09060			Zinc finger, RING-type;Transcr...		Potri.013G019000 [exp]	10.09	0.8297
AT5G07980			dentin sialophosphoprotein-rel...		Potri.015G056200 [exp]	15.58	0.8261
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Potri.010G056900 [exp]	18.30	0.8353
AT1G17680			tetratricopeptide repeat (TPR)...		Potri.013G128900 [exp]	18.89	0.8016
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.001G123400 [exp]	18.97	0.8358
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060900 [exp]	19.51	0.8362
AT4G10320			tRNA synthetase class I (I, L,...		Potri.007G126501 [exp]	23.95	0.8092

Compare expression of checked genes

Potri.016G007300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.