Plant FIBer expression Database

Potri.016G007400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G13130 60 / 4e-11 unknown protein
AT2G04515 48 / 7e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G366500
[exp]
46 / 7e-06 AT3G13130 64 / 5e-12 unknown protein
Potri.014G166900
[exp]
45 / 7e-06 AT2G04515 52 / 1e-08 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039066
[exp]
54 / 1e-08 AT3G13130 61 / 3e-11 unknown protein
Lus10038793
[exp]
52 / 3e-08 AT3G13130 59 / 1e-10 unknown protein
Lus10004415
[exp]
52 / 5e-08 AT3G13130 54 / 1e-08 unknown protein
Lus10016611
[exp]
52 / 5e-08 AT3G13130 62 / 1e-11 unknown protein
Lus10006387
[exp]
40 / 0.0005 AT3G13130 70 / 2e-14 unknown protein
PFAM info
Representative CDS sequence
>Potri.016G007400.1 pacid=42809765 polypeptide=Potri.016G007400.1.p locus=Potri.016G007400 ID=Potri.016G007400.1.v4.1 annot-version=v4.1
ATGCAGGACCAAACTTACCAGTACCATTTCTTGAGAAGGACCTTGCAGTTTCTTATCTCGGTCTCTTTATTTTCTTTGTTTCTTTGCTTCTCTTCAGGCT
TTTCTTTGTTTCCCAAACCCTTGATTTTATATATTAATACTGGTGTATTCTCATTTCTTAGTCATTACCTAGAGAGGAAGTATATGTTTCTCATTTGTAA
TGGAATCCTTGCTATTCTTGCTAAGAGTTCAGTTTCTTCTTCAGAAACTCCTGCTTCTGATGACCAGTCTAATCTTGGTGATGAAAGGCAGTTATCATCA
GCACCTACCTTATCTTCTGCCAAAGCTGAGGCTACTGTTGATGATCAAGAAGTTCAGGTGGCAAGTGTTGAATCTCTAGAGGATATTGTTCTTGCAACTG
AAGAGGAGGAGGAGGAGGAGGAGGAGGAGACTACTTCAAGTCAAGCTTTGATTACAGAAGAAGAAGAGTACATAGAAGAAAAAAGAGAGTGCTTGTTGAA
ACAAGAGGAAGAAGGAAATGAGGAGTTGGCAAGTACTGAAGAATTGAACAGGAGAATTGAGGAATTTATAAGGAAAATGAAAGAAGAAATAAGGATTGAA
GCTCAACAACAACTAATTGCAGAATAA
AA sequence
>Potri.016G007400.1 pacid=42809765 polypeptide=Potri.016G007400.1.p locus=Potri.016G007400 ID=Potri.016G007400.1.v4.1 annot-version=v4.1
MQDQTYQYHFLRRTLQFLISVSLFSLFLCFSSGFSLFPKPLILYINTGVFSFLSHYLERKYMFLICNGILAILAKSSVSSSETPASDDQSNLGDERQLSS
APTLSSAKAEATVDDQEVQVASVESLEDIVLATEEEEEEEEEETTSSQALITEEEEYIEEKRECLLKQEEEGNEELASTEELNRRIEEFIRKMKEEIRIE
AQQQLIAE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G13130 unknown protein Potri.016G007400
[exp]
0 1
AT4G00755 F-box family protein (.1.2) Potri.002G153900
[exp]
3.87 0.7697
AT4G21320 HSA32 HEAT-STRESS-ASSOCIATED 32, Ald... Potri.011G031600
[exp]
21.16 0.7635
AT4G35580 NAC NTL9, CBNAC NAC transcription factor-like ... Potri.014G107500
[exp]
40.37 0.6630
AT5G02220 unknown protein Potri.008G057600
[exp]
63.63 0.6873
AT5G07330 unknown protein Potri.012G111000
[exp]
71.87 0.7102
AT1G78070 Transducin/WD40 repeat-like su... Potri.002G094100
[exp]
83.68 0.6797
AT3G12300 unknown protein Potri.003G193900
[exp]
85.97 0.6650
AT4G02260 AT-RSH1, RSH1, ... RELA-SPOT HOMOLOG 1, RELA/SPOT... Potri.001G434400
[exp]
96.93 0.6601
AT5G64730 Transducin/WD40 repeat-like su... Potri.001G306500
[exp]
98.59 0.6340
AT2G24830 C3HZnF zinc finger (CCCH-type) family... Potri.018G016200
[exp]
101.79 0.6642

Potri.016G007400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.