Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55600 492 / 4e-166 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein AT1G68580 277 / 1e-83 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT4G17330 59 / 2e-08 ATG2484-1 G2484-1 protein (.1) AT1G09320 57 / 3e-08 agenet domain-containing protein (.1) AT1G26540 54 / 4e-07 Agenet domain-containing protein (.1) AT5G58610 51 / 3e-06 PHD finger transcription factor, putative (.1) AT1G06340 40 / 0.0008 Plant Tudor-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G017400 [exp] 1145 / 0 AT5G55600 493 / 1e-166 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.001G365800 [exp] 538 / 0 AT5G55600 663 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Potri.008G119400 [exp] 312 / 1e-96 AT1G68580 459 / 9e-154 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.010G126700 [exp] 310 / 8e-96 AT1G68580 478 / 1e-160 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.001G157300 [exp] 71 / 2e-12 AT4G17330 726 / 0.0 G2484-1 protein (.1) Potri.003G077600 [exp] 68 / 2e-11 AT4G17330 773 / 0.0 G2484-1 protein (.1) Potri.013G006900 [exp] 54 / 2e-07 AT1G09320 268 / 1e-85 agenet domain-containing protein (.1) Potri.009G072600 [exp] 54 / 3e-07 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.005G011100 [exp] 53 / 4e-07 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003906 [exp] 620 / 0 AT5G55600 455 / 3e-152 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Lus10007115 [exp] 524 / 8e-178 AT5G55600 606 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Lus10016606 [exp] 517 / 6e-175 AT5G55600 604 / 0.0 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein Lus10010903 [exp] 63 / 4e-10 AT1G09320 136 / 3e-35 agenet domain-containing protein (.1) Lus10004730 [exp] 64 / 5e-10 AT4G17330 772 / 0.0 G2484-1 protein (.1) Lus10007793 [exp] 63 / 8e-10 AT4G17330 508 / 1e-147 G2484-1 protein (.1) Lus10031429 [exp] 59 / 9e-09 AT1G09320 131 / 2e-33 agenet domain-containing protein (.1) Lus10037805 [exp] 57 / 4e-08 AT3G06520 271 / 9e-86 agenet domain-containing protein (.1) Lus10017088 [exp] 54 / 3e-07 AT3G06520 283 / 1e-90 agenet domain-containing protein (.1) Lus10027325 [exp] 50 / 5e-07 AT1G06340 95 / 2e-25 Plant Tudor-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01426 [poplar] [flax] BAH BAH domain CL0049 [poplar] [flax] Tudor PF05641 [poplar] [flax] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Potri.016G007500.1 pacid=42809983 polypeptide=Potri.016G007500.1.p locus=Potri.016G007500 ID=Potri.016G007500.1.v4.1 annot-version=v4.1 ATGTCTGCAAATGATGATGCTTTTGTGGCATGGGAGGAGCATATTATATGCCATGAACGTGGTAGCCGTGTGGTTCACTATCACTTGAAGGATACGTTTG GGGATTTAGTTCTTGCTGTTATAGGGACTGAGAGAAGCATAAGGCACATGACATATGTAGTTTCCGACGAGTTCTTGGAAGCCTATGGGTCCAACGAGTC CATCAATGCATCTACGAAATGGAGAGCCCGGCGAGAAGTTGTGGACTGGTTGACATCGATGGTATCAAATGAAGGATCCCCTCTACATGTTTCGAATGCA CAGATAAATGGCTCAGCTCAAGGTTCAGGCTCACTTGGAGCATCAATGACTGGATTGTGTTCTTCTAAAACCTATTTACCAGTTCGGATGGCTCGAAGCA AATTGAAGGTTCAGAATCCACACATTAAGTGGTCTGGTGCTGCATGGATATGTGCTAAAGAACTCAGGCACTACCCAGCCTTTTTTAGGAATGGGACTAC CATAACTGTCCATTCCTTTGTGTTCATAATGGCTGAAGAAAAAAGCCGCTACCTTGGATACCTGGAAGATATGTATGAAGACAAGAAGGGGCGGAAAAAG GTAAAGGTGCGATGGTTTCACCACAACCAGGAAGTCAAGGGTGTAATTCCTCAACTGAATCCTCACCCCCAAGAAGTTTTTATCACACCTAATGTCCAAG TGATCAATGCAGAGTACATTGATTGCCCGGCAACAGTATTGACACCCAGGCATTATGATAAATGCGTGGCTGTTGTTCCACATGCATCAACGCTTGGTGT CCACATGTGCTTTAGGCAGTTTAAAAACAACAAGATCAAGCCATTTGCTCTTACTAAATTGCATGGATACTCTAATCAAGCAATCCTCTCTGCTTTGGAT GGATCTATTGTCCCCGAGCAAAAGGTTAGGTACCATAATCAGTACAAGGAAGACGATGAAGAATTGACCCATGATAACTGTACCAGAGTGGGTAGCAAGA GAAATAGAACTTCCAAGGAGCAAGACAGACTTGAGAGTAGATCAGATCTCAGAAATTGGGGCTGTGGAAATCCGATAGCAAAATGTAAATCAAGATACCC AAAACTGAAGCTACGGTTATCGAAGAAAACCATGGGCATTGAATTTGTTATGCCCCAGTCCAAATGTCCTGCTCCTTTCAAAGTGAATGAAAAGATAGAG CTGCTCTGCCAAGATAGTGGCATTCGAGGCTGCTGGTTTAGATGTAAGGTCTTGCAGGCCTCTCAGAAGCATCTGAAAGTCCAATATGAAGATATCCAGG ATGTGGAGGGATCTGGAAATCTAGAGGAATGGGTCCCTTCTTCTAGAGTGGCTGCTCCTGATAAACTTGGCATGAGATGTTTTGGGCGCCAGACAATCCG GCCACATCCTCAGAATCATTCTGCTGAAAATGTTTTTGAGGTTGGAACACCAATTGATGCATGGTGGAGTGATGGGTGGTGGGAAGGCATTGCAGTGGGA GTAGACATCTCTGGAGGTGACTGTCTACGAGTTTACCTCCCTGGTGAAGGCAAGTTCCTGGCTGTCCCAAGGAAGTATACGAGGAGTTCCAGAGATTGGG TTGATAACAAATGGGTTGATGTAATGGCAAAGCCTGATATACTCCATTATCTATCCTCAGATGCCATTTCAAGCATCAAGCTCGAGGCACAAGGGTGTGA TAGTGCTGCATCACTGGAGCACAAAGTTGTCAAAACTTCCAGACTTGAAGCTATTGAAGAAGATGAACCCTTACCTGGTTCAGTTTTGTCTTATGACCTC AAAAATGTAAAGGAGGTCTATTTGAGACAGAGGCCTGATGTAAATGAGAAGGATGAGCGAAAAATACATGGAGGTGTTGATAATGATGATGTTAGTGGTG ATTGTGATGGTGAGGAGAAAGCTAACATTGCTGCTGATGGTGGTGGTGAAGAGAATGCTGGGAATAACACTGGGTTGCTATTGGAGGATGATCTTAAATC TGTTAACAAGACAAGTGAAGCAGCGAAAGCTTTAGAAATGATCAACCAAGTTGCATGA
AA sequence Show only first row Show all	>Potri.016G007500.1 pacid=42809983 polypeptide=Potri.016G007500.1.p locus=Potri.016G007500 ID=Potri.016G007500.1.v4.1 annot-version=v4.1 MSANDDAFVAWEEHIICHERGSRVVHYHLKDTFGDLVLAVIGTERSIRHMTYVVSDEFLEAYGSNESINASTKWRARREVVDWLTSMVSNEGSPLHVSNA QINGSAQGSGSLGASMTGLCSSKTYLPVRMARSKLKVQNPHIKWSGAAWICAKELRHYPAFFRNGTTITVHSFVFIMAEEKSRYLGYLEDMYEDKKGRKK VKVRWFHHNQEVKGVIPQLNPHPQEVFITPNVQVINAEYIDCPATVLTPRHYDKCVAVVPHASTLGVHMCFRQFKNNKIKPFALTKLHGYSNQAILSALD GSIVPEQKVRYHNQYKEDDEELTHDNCTRVGSKRNRTSKEQDRLESRSDLRNWGCGNPIAKCKSRYPKLKLRLSKKTMGIEFVMPQSKCPAPFKVNEKIE LLCQDSGIRGCWFRCKVLQASQKHLKVQYEDIQDVEGSGNLEEWVPSSRVAAPDKLGMRCFGRQTIRPHPQNHSAENVFEVGTPIDAWWSDGWWEGIAVG VDISGGDCLRVYLPGEGKFLAVPRKYTRSSRDWVDNKWVDVMAKPDILHYLSSDAISSIKLEAQGCDSAASLEHKVVKTSRLEAIEEDEPLPGSVLSYDL KNVKEVYLRQRPDVNEKDERKIHGGVDNDDVSGDCDGEEKANIAADGGGEENAGNNTGLLLEDDLKSVNKTSEAAKALEMINQVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55600			agenet domain-containing prote...		Potri.016G007500 [exp]	0	1
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Potri.012G099600 [exp]	2.44	0.8694
AT2G36350			Protein kinase superfamily pro...		Potri.004G186300 [exp]	2.82	0.8525
AT3G19740			P-loop containing nucleoside t...		Potri.005G093300 [exp]	5.74	0.8619
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G024100 [exp]	6.40	0.8698
					Potri.006G211800 [exp]	7.21	0.8618
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Potri.006G248100 [exp]	8.48	0.8576	LUG.1
					Potri.013G087300 [exp]	8.77	0.8489
AT5G01260			Carbohydrate-binding-like fold...		Potri.006G099200 [exp]	15.96	0.8405
AT1G18610			Galactose oxidase/kelch repeat...		Potri.015G059400 [exp]	16.97	0.8368
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Potri.008G105200 [exp]	18.76	0.8287	Pt-PHYB.1

Compare expression of checked genes

Potri.016G007500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.