Plant FIBer expression Database

Potri.016G008700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G16440 725 / 0 ferredoxin hydrogenases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G017000
[exp]
913 / 0 AT4G16440 722 / 0.0 ferredoxin hydrogenases (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039061
[exp]
720 / 0 AT4G16440 696 / 0.0 ferredoxin hydrogenases (.1)
Lus10038798
[exp]
632 / 0 AT4G16440 614 / 0.0 ferredoxin hydrogenases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02906 Fe_hyd_lg_C Iron only hydrogenase large subunit, C-terminal domain
Representative CDS sequence
>Potri.016G008700.1 pacid=42810328 polypeptide=Potri.016G008700.1.p locus=Potri.016G008700 ID=Potri.016G008700.1.v4.1 annot-version=v4.1
ATGTCGGAGAAATTCTCACCGACGTTGAGAATTGGGGATCTGAGTGACTTTATAGCTCCTTCTCAAGCTTGTGTTGTGTCTTTGAAAGGCCTCAAAACGA
CAGCTCCTAACACTGTAAAACGCGACAAACATGAGGTTGCTATTGCTAATAAGGAGCAAACTGACCCTGTTAAAATTTCGCTTAAGGACTGTTTGGCTTG
CAGTGGATGCATAACATCAGCGGAGACAGTTATGCTTGAGAAGCAAAGTTTGGATGATTTCCTATCCAATATTGATAAAGGGAAAGCTATAATTGTTTCG
TTGTCTCCACAGTCGAGAGCTTCTCTTGCGGTTTATTTTGGCATCTCTCCCCTTCAGGTTTTTAAGAAACTCACGACATTTTTTAAGTCTTTGGGAGTGA
AAGCTGTATTTGATACAAGTTCAAGCAGGGACTTAACACTTATAGAGACTTGTAACGAGTTTGTTAATCGGTACAAACAGAGCCAGTTGAACAACAATGA
AAAATCTAATTCAGCCTTACCCATGCTTTCTTCAGCATGTCCAGGTTGGATATGCTATGCTGAAAAGCAACTAGGATCCTACGTTCTGCCTTTTATATCT
TCTGTGAAGAGCCCACAACAAACAATTGGAGCTACCATCAAGCATCACATTTGTCAAAAAATGGGCCTCAGGCCTGATGAGGTTTACCATGTGACCGTGA
TGCCATGTTATGATAAGAAGCTTGAGGCTGTAAGGGACGACTTTGTTTTTGAAGTGGAACAAGAAGATGCAAATAAAAATGGTCTCAGGATTGCAGAGGT
TGATTCAGTTTTGACAACTGGAGAAGTCTTAGATTTGATAAAGTTCAAAGCAGTGGATTTTGAAACCTTAGACGACTCTCCTCTAGATAAAATGTTGACA
AATGTTAGTGAAGAAGGTTATCTCTATGGAGTAGCTGGAAGTTCTGGTGGTTATGCTGATACAGTGTTTCGGAATGCTGCTAGAATGCTATATGGAAGAG
AAATCGAAGGCCCTTTGGCCTTCAAAAGTCTTCGAAACATGGATTTCCGTGAAGTGACTTTGGAAGTGGATGGAAAAGTTGTACTGAAATTTGCTCTTTG
TTATGGCTTTCAAAACCTACAAAATATTGTGAGAAAAGTCAAAATAGGAAAATGTGATTATCACTTTGTGGAAGTTATGGCGTGCCCATCCGGATGCCTG
AATGGCGGTGGTCAAATCAAGCCAAAGCCACAACAATCTCCAAAAGAGCTGCTTCAGTCATTAGAAACTATTTATATGGAAAATGTTTTGATCAAAGATC
CTTTCGAGAATCTTCTTGTTAAATCCTTATATGACGAGTGGCTTGAAAAACCTGGTTCCGAAAAAGCTAAAAGGCACATGCATACAGAATATCACCCTAT
GGTAAAGAGCGTAACTGCACAATTGCATAATTGGTGA
AA sequence
>Potri.016G008700.1 pacid=42810328 polypeptide=Potri.016G008700.1.p locus=Potri.016G008700 ID=Potri.016G008700.1.v4.1 annot-version=v4.1
MSEKFSPTLRIGDLSDFIAPSQACVVSLKGLKTTAPNTVKRDKHEVAIANKEQTDPVKISLKDCLACSGCITSAETVMLEKQSLDDFLSNIDKGKAIIVS
LSPQSRASLAVYFGISPLQVFKKLTTFFKSLGVKAVFDTSSSRDLTLIETCNEFVNRYKQSQLNNNEKSNSALPMLSSACPGWICYAEKQLGSYVLPFIS
SVKSPQQTIGATIKHHICQKMGLRPDEVYHVTVMPCYDKKLEAVRDDFVFEVEQEDANKNGLRIAEVDSVLTTGEVLDLIKFKAVDFETLDDSPLDKMLT
NVSEEGYLYGVAGSSGGYADTVFRNAARMLYGREIEGPLAFKSLRNMDFREVTLEVDGKVVLKFALCYGFQNLQNIVRKVKIGKCDYHFVEVMACPSGCL
NGGGQIKPKPQQSPKELLQSLETIYMENVLIKDPFENLLVKSLYDEWLEKPGSEKAKRHMHTEYHPMVKSVTAQLHNW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G16440 ferredoxin hydrogenases (.1) Potri.016G008700
[exp]
0 1
AT2G21150 XCT XAP5 CIRCADIAN TIMEKEEPER, XAP... Potri.009G129700
[exp]
5.91 0.7862
AT4G29000 CPP Tesmin/TSO1-like CXC domain-co... Potri.018G083000
[exp]
12.80 0.7835
AT4G16440 ferredoxin hydrogenases (.1) Potri.006G017000
[exp]
16.12 0.6502
AT3G08505 C3HZnF zinc finger (CCCH-type/C3HC4-t... Potri.001G268200
[exp]
20.39 0.6992
AT1G17520 MYB Homeodomain-like/winged-helix ... Potri.006G147400
[exp]
22.44 0.7269
AT1G06230 GTE4 global transcription factor gr... Potri.019G090700
[exp]
28.51 0.7728
AT1G28060 Pre-mRNA-splicing factor 3 (.1... Potri.010G213300
[exp]
30.29 0.7339
AT4G11560 bromo-adjacent homology (BAH) ... Potri.003G127400
[exp]
30.52 0.7646
AT3G25910 Protein of unknown function (D... Potri.006G154300
[exp]
31.17 0.7186
AT3G22170 FAR1_related FHY3 far-red elongated hypocotyls 3... Potri.016G018300
[exp]
31.62 0.7546 Pt-FHY3.1

Potri.016G008700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.