Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07800 291 / 1e-99 Thymidine kinase (.1) AT5G23070 289 / 5e-98 Thymidine kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G015800 [exp] 431 / 3e-154 AT5G23070 306 / 8e-105 Thymidine kinase (.1) Potri.002G222300 [exp] 302 / 3e-104 AT3G07800 316 / 2e-110 Thymidine kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039055 [exp] 317 / 6e-109 AT5G23070 309 / 9e-106 Thymidine kinase (.1) Lus10012347 [exp] 292 / 7e-100 AT3G07800 303 / 4e-105 Thymidine kinase (.1) Lus10038804 [exp] 305 / 6e-98 AT5G64320 367 / 3e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006394 [exp] 175 / 2e-54 AT3G07800 178 / 2e-56 Thymidine kinase (.1) Lus10016925 [exp] 43 / 1e-05 AT5G23070 58 / 1e-11 Thymidine kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00265 [poplar] [flax] TK Thymidine kinase
Representative CDS sequence Show only first row Show all	>Potri.016G009951.1 pacid=42809482 polypeptide=Potri.016G009951.1.p locus=Potri.016G009951 ID=Potri.016G009951.1.v4.1 annot-version=v4.1 ATGTTAAAAATTACCATTTCAAGAATGAAGGCACTAATCACCCCACCATTTTCATTCTCTCCAATGTCCAAAAAGGCCACACCTTTAGCTTCCAGTTTCT TCTCTTTAGCTTCAAAATCCAATCTTTTCTCTAATCTTCAAAACCCCATTTCTTATTTCCCTCTAAAACCCTCTATGATTTCACTTCCCTCAAATTTTCC AATTCAGACCCGGTGTGTCCATTCAAAATCCTCTCTTTCTTCTTCATCTGGTGAAATTCATGTGATTGTTGGTCCTATGTTTGCTGGCAAAACTACTACT CTTCTTCACCGGGTTCAAGCTGAAATCAATGATGGCAGAAACGTAGCAATTATAAAATCAAACAAGGATAATAGATATGGGTTGGATTCAGTAGTGACAC ATGATGGGGTTAAATTACCATGTTGGGCACTGCCCAATCTATCATCATTCAAACAGAGTTTTGGTCAGGATGCGTATGATCAGCTAGATGTGATTGGCAT TGATGAAGCACAATTCTTCGGAGACTTGTATGATTTCTGCCGTGAAGTTGCTGATCATGATGGCAAAACTGTGATAGTTGCTGGCCTGGATGGTGACTAT CTGAGGAGGAGTTTTGGTTCCGTTCTTGATATAATTCCCCTTGCTGATTCTGTAACCAAGTTAAGCGCACGATGTGAAATTTGTGGAAAACGTGCTTTCT TCACCTTAAGAAAGACCGAGGAGACACGGACAGAACTGATTGGTGGGGCTGATGTTTATATGCCTGTATGTCGACAGCATTATGTCAGCGGACAAGTTGC TGTGGAAGCTGCAAGAATGGTCCTGGAATCTCAGAAGGCTCAGTGTGGCTCCTGTCCGTAG
AA sequence Show only first row Show all	>Potri.016G009951.1 pacid=42809482 polypeptide=Potri.016G009951.1.p locus=Potri.016G009951 ID=Potri.016G009951.1.v4.1 annot-version=v4.1 MLKITISRMKALITPPFSFSPMSKKATPLASSFFSLASKSNLFSNLQNPISYFPLKPSMISLPSNFPIQTRCVHSKSSLSSSSGEIHVIVGPMFAGKTTT LLHRVQAEINDGRNVAIIKSNKDNRYGLDSVVTHDGVKLPCWALPNLSSFKQSFGQDAYDQLDVIGIDEAQFFGDLYDFCREVADHDGKTVIVAGLDGDY LRRSFGSVLDIIPLADSVTKLSARCEICGKRAFFTLRKTEETRTELIGGADVYMPVCRQHYVSGQVAVEAARMVLESQKAQCGSCP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07800			Thymidine kinase (.1)		Potri.016G009951 [exp]	0	1
AT4G20130		PTAC14	plastid transcriptionally acti...		Potri.003G155100 [exp]	11.48	0.8222
AT1G08640		CJD1	Chloroplast J-like domain 1 (....		Potri.013G046200 [exp]	17.02	0.8408
AT3G60210			GroES-like family protein (.1)		Potri.014G044300 [exp]	41.56	0.7949	CPN10.4
AT3G01790			Ribosomal protein L13 family p...		Potri.017G066000 [exp]	71.33	0.7848
AT1G17870		ATEGY3	ethylene-dependent gravitropis...		Potri.001G289700 [exp]	102.97	0.7749
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Potri.011G050300 [exp]	130.81	0.7504
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Potri.011G050000 [exp]	133.92	0.7580
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Potri.011G050100 [exp]	140.36	0.7482
AT4G30930		WRKY32, NFD1	NUCLEAR FUSION DEFECTIVE 1, Ri...		Potri.015G095700 [exp]	152.74	0.7471	Pt-RPL21.5
AT5G10625			unknown protein		Potri.006G276100 [exp]	156.07	0.7020

Compare expression of checked genes

Potri.016G009951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.