Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16470 551 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 319 / 1e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G03880 310 / 5e-100 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G13770 309 / 1e-99 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G01510 306 / 8e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 304 / 8e-96 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 301 / 8e-96 MEF22 mitochondrial editing factor 22 (.1) AT3G24000 297 / 1e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33760 295 / 1e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G04780 295 / 3e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G001000 [exp] 320 / 6e-104 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.004G111300 [exp] 325 / 5e-103 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 313 / 3e-101 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 315 / 2e-100 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G050200 [exp] 311 / 2e-100 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G095100 [exp] 309 / 8e-99 AT5G50390 865 / 0.0 EMBRYO DEFECTIVE 3141, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G208000 [exp] 308 / 2e-98 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 310 / 3e-98 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G152000 [exp] 308 / 6e-98 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040504 [exp] 311 / 4e-100 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 306 / 3e-97 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025490 [exp] 303 / 4e-97 AT2G33760 734 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 305 / 2e-96 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 301 / 2e-96 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024381 [exp] 304 / 6e-96 AT3G23330 777 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031994 [exp] 304 / 1e-95 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010998 [exp] 301 / 2e-95 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028837 [exp] 293 / 2e-95 AT1G11290 650 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 303 / 3e-95 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.016G010100.2 pacid=42809021 polypeptide=Potri.016G010075.1.p locus=Potri.016G010100 ID=Potri.016G010100.2.v4.1 annot-version=v4.1 ATGAACGAAGCCGTGGGGCTATTATGGCGATCAGGGTTGGAAGTGGACCATGGGACCTATGCTCTTCTGTTGCAAGAATGCATTTTCAAGAAACTTTATA ATAAAGGGAAAAGAATCCATGCACAAATGGTTGTTGTTGGGTATGTTCCAAATGAGTACCTGAAGACTAAATTGATGATATTGTATGCAAAATCTGGGGA TTTAAAGACTATGCATTTGTTGTTTGACATGTTGATGGAGAAAAGCTTGATTTCTTGGAACGCATTGATTGCTGGATATGTGCAAAAAGGGCTTGAAGAA ATGGGACTTAGTTTTTATTATGAAATGAGACAAAATGGTCTGACACCAGACCAGTATACCTTTGCGTCAGTTTTCAGAGCCTGTGCGACTTTAGCAACAC TGGAGCATGGGAAGCGAGCCCATTGTGTCATGATGAAGTGCTTTCTTAAAGAAAATGTTGTAGTCAGTAGTGCCCTCATGGATATGTACTTCAAATGCAG CAGCCTGTCCGATGGACATTTGGTCTTTGATAAATCATCAAATAGAAATGTTGTCACCTGGACTTCTTTGATATCTGGGTATGGCCATCATGGAAGAGTC TCAGAGGTGATAGAATCATTTCACAGGATGAAAGATGAAGGTTTCCAACCAAATTATGTTACTTTTCTTGCAGTCCTTTCTGCTTGTAGCCATGGAGGTT TGGTTGATGAGGGTTGGGCCTATTTCTCATCAATGAGGAGAGATTATGGAATCCAGCCTAGAGGGAAACATTATGCAGCCATGGTCGATCTTCTAGGCCG TGCTGGGAGGTTAAAAGAGGCTTATGAGTTTGTTGTTAATGCACCATGCAAGGAACACTCGGTTTTATGGGGTGCTTTGCTTGGTGCTTGTAAGATTCAT GGTGATATGGACCTGATAGAGCTTGCCGCTAGGAAATACTTTGAACTGGATCCAGAAAATGCTGGAAAGTATGTAGTCTTATCTAATGCCTATGCTGCTT TTGGACTTTGGGATAGTGTTGCAGAGGTTAGGGGGGTGATGAGAGATACAGAAATAAATAAAGAGCCTGCTTATAGCAGCATTGAGGTTCAAGGGAAAGC CCACTTTTTCCTACAGGGTGATAAATCTCATAGGGAATCTGAGGAGATATACAAGACTATTATTGAAATGATTTGGATTTTAAATGATGCAGGCTATGTT CCTGATTTGAGTGATTGTTAA
AA sequence Show only first row Show all	>Potri.016G010100.2 pacid=42809021 polypeptide=Potri.016G010075.1.p locus=Potri.016G010100 ID=Potri.016G010100.2.v4.1 annot-version=v4.1 MNEAVGLLWRSGLEVDHGTYALLLQECIFKKLYNKGKRIHAQMVVVGYVPNEYLKTKLMILYAKSGDLKTMHLLFDMLMEKSLISWNALIAGYVQKGLEE MGLSFYYEMRQNGLTPDQYTFASVFRACATLATLEHGKRAHCVMMKCFLKENVVVSSALMDMYFKCSSLSDGHLVFDKSSNRNVVTWTSLISGYGHHGRV SEVIESFHRMKDEGFQPNYVTFLAVLSACSHGGLVDEGWAYFSSMRRDYGIQPRGKHYAAMVDLLGRAGRLKEAYEFVVNAPCKEHSVLWGALLGACKIH GDMDLIELAARKYFELDPENAGKYVVLSNAYAAFGLWDSVAEVRGVMRDTEINKEPAYSSIEVQGKAHFFLQGDKSHRESEEIYKTIIEMIWILNDAGYV PDLSDC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16470			Tetratricopeptide repeat (TPR)...		Potri.016G010100 [exp]	0	1
AT3G09720			P-loop containing nucleoside t...		Potri.019G064900 [exp]	10.09	0.8082
AT3G57600	AP2_ERF	DREB2F	Integrase-type DNA-binding sup...		Potri.006G054500 [exp]	39.38	0.7176	Pt-DREB2.1
AT1G08390			unknown protein		Potri.002G256001 [exp]	40.00	0.7427
					Potri.001G182801 [exp]	46.43	0.7288
AT4G18840			Pentatricopeptide repeat (PPR-...		Potri.001G108500 [exp]	61.84	0.7471
AT1G05410			Protein of unknown function (D...		Potri.010G086600 [exp]	84.99	0.6941
AT1G48380		HYP7, RHL1	HYPOCOTYL 7, root hair initiat...		Potri.004G069400 [exp]	91.38	0.7115
AT5G64420			DNA polymerase V family (.1)		Potri.009G079900 [exp]	136.83	0.6887
AT4G39110			Malectin/receptor-like protein...		Potri.009G120400 [exp]	136.94	0.6811
AT4G19010			AMP-dependent synthetase and l...		Potri.003G099700 [exp]	141.76	0.6637	Ptr4CL13

Compare expression of checked genes

Potri.016G010100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.