Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07810 413 / 1e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G47620 382 / 2e-129 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G26650 345 / 1e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G55550 329 / 1e-108 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G14300 239 / 4e-74 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33410 237 / 2e-73 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G58470 182 / 8e-53 XF41, ATRBP1 RNA-binding protein 1 (.1) AT1G17640 176 / 1e-50 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 161 / 5e-45 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G40490 158 / 3e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G015700 [exp] 733 / 0 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G361300 [exp] 552 / 0 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G161600 [exp] 548 / 0 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G222400 [exp] 537 / 0 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G088100 [exp] 528 / 0 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.008G170400 [exp] 264 / 5e-83 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G067500 [exp] 257 / 2e-80 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G258600 [exp] 247 / 6e-77 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G195300 [exp] 239 / 5e-74 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017555 [exp] 540 / 0 AT3G07810 423 / 7e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043168 [exp] 499 / 4e-174 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 488 / 3e-170 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039054 [exp] 479 / 3e-167 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039053 [exp] 473 / 2e-164 AT3G07810 417 / 1e-142 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038806 [exp] 474 / 3e-164 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10000537 [exp] 471 / 3e-163 AT3G07810 420 / 8e-143 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012348 [exp] 386 / 1e-129 AT3G07810 436 / 5e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10006396 [exp] 339 / 8e-114 AT3G07810 351 / 2e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10022889 [exp] 249 / 3e-78 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.016G010200.2 pacid=42810456 polypeptide=Potri.016G010200.2.p locus=Potri.016G010200 ID=Potri.016G010200.2.v4.1 annot-version=v4.1 ATGGAAATGGAGCTTGGAAAGTTATTCATTGGTGGGATTTCATGGGACACAAATGAAGATCGTCTCAAGGAGTATTTCCGGGCTTTTGGGGATGTTTTAG AAGCTGTCATAATGAAGGATCGAGCCACAGGTCGTGCTCGTGGCTTTGGTTTTGTTGTTTTCGCTGACCCTGCTGTTGCTGAGAGAGTTGTGATGGAAAA GCACCTTATAGATGGTAGAAATGTCGAGGCAAAGAAGGCAGTTCCTAGGGAGGATCAGAGCACTCTGAACAAAAATAGTAGCAGCATTAATGGTTCACCT GGTCCTGCCCGAACAAAGAAGATATTTGTAGGAGGTTTAGCATCTACAGTTACAGATAGTGACTTTAAGAAGTACTTTGATCAGTTTGGAGTGATTGTAG ATGTGGTGGTTATGTATGATCACAACACTCAGAGGCCAAGAGGTTTTGGATTCATCACCTATGATTCAGAGGAAGCGGTTGATAGAGTATTGCACAAAAC CTTTCATGAACTCAACGGTAAAATGGTTGAGGTCAAGCGGGCTGTCCCAAAGGAATTATCCCCAGGGCCAACACGGAACCAGTTAGGAGGACTTAACTAT AGTCCAAGTAGAGTCAGTAGCTTCCTCAATGGTTATACTCAGGGATTTAACCAAAGTTCTGTTGGAGGGTATGGAGTTAGAATGGATGGTAGGTTTAGTT CTGTTAATGTTGGACGGAATAACTTTTCTCCATTTGGTACTGGTTATGGGATGGGATTGAATTTTGAGCAGGTGTTGAACCCAAGTTATGGGGGAAATTC AAACCTTAATTCTAATGCTGGTTATGGACGGGTCAGCCCTTCATATAGTGGAAATGCAAGCAGGTATAGCAACCCCATAGGGTTAAGTGTAGGCAATGGA GGAAGTACTTCTGTATTAAATTCAACAGCTCACACATTATGGGGAAATGGAAGTAATAATCATTCTTCAAGCGCCAACAACTCCAGTACTTTTATGGGTT CTGGAACTGGAAACTCGGGAATGGGTTCTTTTGGCAGTATTGGAGCACTTTGGGGCTCCTCTGCTAATTCCGGGCAAGGTGGAGGAGTTGGCTCTGTCAA TAGCAGTAGCAATCTAGGCTTTGGCAGTGGAGATTTTGATATTGGTCTAGGAGGTGTAGGTTATGGAAGAAACAGTAGGACAGGTGTTGCACTGACATCA TCTCATGTTGCATCCAATGGTGGTTATGAAGGGGCTTATGCAGACTTTTATGAAAAGGGCTCATTATATGGGGATTCCACCTGGCAATCTTCACCTTCAG AGCCAGAAGTGTCAGGCTCATTTGGTTTTGGGCTTGGAACTGCAGCTTCTGATGTTATGACTAAAAATTCTGCTGGTTATGTTGGTGGTTATAGTGTTGC TAATAGACAATCAACTAGAGGTAAGTATTCTTTGCCCCCATGTTTATGCTGA
AA sequence Show only first row Show all	>Potri.016G010200.2 pacid=42810456 polypeptide=Potri.016G010200.2.p locus=Potri.016G010200 ID=Potri.016G010200.2.v4.1 annot-version=v4.1 MEMELGKLFIGGISWDTNEDRLKEYFRAFGDVLEAVIMKDRATGRARGFGFVVFADPAVAERVVMEKHLIDGRNVEAKKAVPREDQSTLNKNSSSINGSP GPARTKKIFVGGLASTVTDSDFKKYFDQFGVIVDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKELSPGPTRNQLGGLNY SPSRVSSFLNGYTQGFNQSSVGGYGVRMDGRFSSVNVGRNNFSPFGTGYGMGLNFEQVLNPSYGGNSNLNSNAGYGRVSPSYSGNASRYSNPIGLSVGNG GSTSVLNSTAHTLWGNGSNNHSSSANNSSTFMGSGTGNSGMGSFGSIGALWGSSANSGQGGGVGSVNSSSNLGFGSGDFDIGLGGVGYGRNSRTGVALTS SHVASNGGYEGAYADFYEKGSLYGDSTWQSSPSEPEVSGSFGFGLGTAASDVMTKNSAGYVGGYSVANRQSTRGKYSLPPCLC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.016G010200 [exp]	0	1
AT1G02180			ferredoxin-related (.1)		Potri.006G220700 [exp]	6.08	0.9045
AT3G19280		FUCTA, FUCT1, A...	fucosyltransferase 11 (.1)		Potri.009G101500 [exp]	6.16	0.8910	FUCT3.2
AT3G54950		pPLAIIIbeta, PL...	patatin-related phospholipase ...		Potri.012G123900 [exp]	7.41	0.8804
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Potri.001G112200 [exp]	9.79	0.8838	KNAT7.1
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.001G292900 [exp]	11.22	0.8753
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Potri.014G147000 [exp]	12.24	0.8874	Pt-RIC2.1
AT1G01780	LIM	PLIM2b	PLIM2b, GATA type zinc finger ...		Potri.002G157300 [exp]	14.96	0.8695
AT3G12530		PSF2	PSF2 (.1.2)		Potri.010G203600 [exp]	17.23	0.8115
AT3G10180			P-loop containing nucleoside t...		Potri.006G040700 [exp]	17.29	0.8723
AT1G27920		MAP65-8	microtubule-associated protein...		Potri.001G055100 [exp]	20.66	0.8777

Compare expression of checked genes

Potri.016G010200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.