Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16480 826 / 0 ATINT4 inositol transporter 4 (.1) AT2G35740 734 / 0 ATINT3 nositol transporter 3 (.1) AT1G30220 678 / 0 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT2G43330 341 / 6e-111 ATINT1 inositol transporter 1 (.1) AT4G36670 150 / 2e-39 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G16130 149 / 7e-39 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT1G50310 148 / 2e-38 ATSTP9 sugar transporter 9 (.1) AT2G16120 147 / 3e-38 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G20780 147 / 6e-38 AtPLT4 Major facilitator superfamily protein (.1) AT3G19940 146 / 9e-38 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G015200 [exp] 1011 / 0 AT4G16480 811 / 0.0 inositol transporter 4 (.1) Potri.006G015300 [exp] 825 / 0 AT4G16480 788 / 0.0 inositol transporter 4 (.1) Potri.007G126800 [exp] 352 / 3e-115 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.017G032200 [exp] 347 / 3e-113 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.004G133340 [exp] 254 / 1e-80 AT1G30220 354 / 6e-120 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Potri.004G133420 [exp] 238 / 3e-75 AT1G30220 328 / 2e-110 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Potri.006G158700 [exp] 194 / 2e-55 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G039100 [exp] 164 / 6e-44 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.013G135200 [exp] 159 / 2e-42 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010500 [exp] 873 / 0 AT4G16480 823 / 0.0 inositol transporter 4 (.1) Lus10017561 [exp] 870 / 0 AT4G16480 820 / 0.0 inositol transporter 4 (.1) Lus10039050 [exp] 794 / 0 AT4G16480 769 / 0.0 inositol transporter 4 (.1) Lus10010501 [exp] 775 / 0 AT4G16480 755 / 0.0 inositol transporter 4 (.1) Lus10038808 [exp] 766 / 0 AT4G16480 760 / 0.0 inositol transporter 4 (.1) Lus10017559 [exp] 695 / 0 AT2G35740 669 / 0.0 nositol transporter 3 (.1) Lus10028118 [exp] 653 / 0 AT1G30220 893 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10042820 [exp] 650 / 0 AT1G30220 890 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10025565 [exp] 349 / 4e-114 AT2G43330 768 / 0.0 inositol transporter 1 (.1) Lus10027026 [exp] 338 / 6e-110 AT2G43330 769 / 0.0 inositol transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.016G010600.3 pacid=42810014 polypeptide=Potri.016G010600.3.p locus=Potri.016G010600 ID=Potri.016G010600.3.v4.1 annot-version=v4.1 ATGGTGGAAGGAGGAGTTACCACAGCTGACAAGACAGAGTTTACAGAATGCTGGAAGACTGTATGGAAGACTCCATATATTATGAGGCTTGCATTTTCAG CTGGCATTGGAGGGCTTCTTTTTGGTTATGATACAGGAGTTATTTCTGGCGCATTGCTTTATATTCGTGATGACTTCGAAGATGTTGACAAAAATACATG GATGCAGGAAACCATCGTGAGTATGGCTGTCGCTGGAGCTATTATTGGTGCTGCATTTGGTGGATATATGAATGACAGGTGGGGCAGGAGAGTGGCAATT TTAGGTGCTGATATCATATTCTTCTTCGGCGCAATTGTCATGGCTGTAGCTCCAAATCCCTGGGTTATTATTATCGGAAGGATTCTGGTTGGCTTGGGAG TGGGAATGGCATCCATGACCGCTCCTCTTTACATTTCAGAAGCTTCACCTGCAAGAATTCGAGGAGCACTCGTTAGCACAAATGGATTGCTGATTACCGG AGGGCAGTTTTTGTCTTATCTAATCAATCTTGCTTTCACCAAGGCTCCTGGAACCTGGCGATGGATGCTCGGAGTTGCTGGAATCCCAGCTTTGGTTCAG TTTGTGTTGATGCTTTCACTTCCGGAGTCGCCCCGATGGCTCTACAGAAAGGATAGGGTAGATGAGGCGAGGGCAATCTTGGAGAAAATCTATCCTGCAC ATGAGGTTGAAGATGAGTTGAATGCCTTGAAACTATCCGTTGACGCTGAGAAGGCTGATGAAGCTGCCCTTGGAGAGGGCATGATAGCTAAAGTGAAGGG TGCGTTGAAAAACCGTGTAGTTCGCAGGGGACTTTATGCCGGTATCACTGTCCAAGTTGCTCAGCAATTTGTGGGTATAAATACAGTCATGTACTATGCC CCGACCATAGTGCAGTTTGCTGGATTTGCTTCGAACTCTGTGGCATTGGCACTCTCTCTCATCACTTCTGGCCTGAATGCTGTTGGCTCCATTGTTAGCA TGTGTTTTGTCGACAGATATGGAAGGAGAAGGCTGATGCTTGTTTCAATGATTGGAATCATTTTCTTCCTCGTGATCTTATCAGTTGTATTTATGGAAGC TTCGAGCCATGCTCCGAAAATCAGTGGAATTGAGTCAGCTCACTTTGGCTCAAACTCTACTTGCTCAGCATACCTGACAGCCCCAGATGCACCAAGGTGG AGCTGTATGACTTGCTTGAAAGCAGATTGTGCTTTCTGTGCTAATGCAGCCAGCGAATTCCATCCTGGAGCCTGCCTGGATTCATCCAAGGTTGTAAGGG GTGAATGCCGTGCTGAAAATCGTGTGTTTTTCGAGAAGGGTTGCCCAAGCAAGTTCGGATTTCTTGCTGTTATACTCCTTGGACTATACATCATTTCCTA TTCACCTGGAATGGGAACCGTACCATGGATTGTGAACTCAGAAATCTATCCGTTGAGATATAGAGGTGTTGGTGGAGGCATTGCTGCTGTGGCCAATTGG TGTTCAAATCTGATCGTGAGCGAGTCTTACTTAAGTCTCACGGAAGCTCTTGGTGCCGGTGGCACATTCTTCGTATTCGCCGGAATTTCCACCATTAGCC TCGTATTCATCTACTTCCTAGTCCCTGAAACTAAAGGCCTGCAATTTGAGGAGGTGGAGAAGTTGCTAGAGGATGGCTACAGACCACGCTTATTTGGAGG AAAGAAAGAAAAATCCAAGGACCAAGTTGAATCCACATAA
AA sequence Show only first row Show all	>Potri.016G010600.3 pacid=42810014 polypeptide=Potri.016G010600.3.p locus=Potri.016G010600 ID=Potri.016G010600.3.v4.1 annot-version=v4.1 MVEGGVTTADKTEFTECWKTVWKTPYIMRLAFSAGIGGLLFGYDTGVISGALLYIRDDFEDVDKNTWMQETIVSMAVAGAIIGAAFGGYMNDRWGRRVAI LGADIIFFFGAIVMAVAPNPWVIIIGRILVGLGVGMASMTAPLYISEASPARIRGALVSTNGLLITGGQFLSYLINLAFTKAPGTWRWMLGVAGIPALVQ FVLMLSLPESPRWLYRKDRVDEARAILEKIYPAHEVEDELNALKLSVDAEKADEAALGEGMIAKVKGALKNRVVRRGLYAGITVQVAQQFVGINTVMYYA PTIVQFAGFASNSVALALSLITSGLNAVGSIVSMCFVDRYGRRRLMLVSMIGIIFFLVILSVVFMEASSHAPKISGIESAHFGSNSTCSAYLTAPDAPRW SCMTCLKADCAFCANAASEFHPGACLDSSKVVRGECRAENRVFFEKGCPSKFGFLAVILLGLYIISYSPGMGTVPWIVNSEIYPLRYRGVGGGIAAVANW CSNLIVSESYLSLTEALGAGGTFFVFAGISTISLVFIYFLVPETKGLQFEEVEKLLEDGYRPRLFGGKKEKSKDQVEST

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16480		ATINT4	inositol transporter 4 (.1)		Potri.016G010600 [exp]	0	1
					Potri.006G108901 [exp]	1.00	0.8887
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.017G018801 [exp]	14.38	0.8665
AT1G54850			HSP20-like chaperones superfam...		Potri.013G024900 [exp]	16.30	0.8573
AT5G36930			Disease resistance protein (TI...		Potri.006G283600 [exp]	18.43	0.8663
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.007G113800 [exp]	22.84	0.8366
AT2G28580			Plant protein of unknown funct...		Potri.007G132300 [exp]	29.12	0.8568
					Potri.017G020864 [exp]	33.49	0.8512
AT4G02550			unknown protein		Potri.012G061366 [exp]	40.39	0.8406
AT4G02550			unknown protein		Potri.003G047151 [exp]	42.26	0.8357
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Potri.001G080000 [exp]	46.04	0.8348

Compare expression of checked genes

Potri.016G010600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.