Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16490 521 / 0 ARM repeat superfamily protein (.1) AT3G01400 248 / 2e-78 ARM repeat superfamily protein (.1) AT5G58680 231 / 9e-72 ARM repeat superfamily protein (.1) AT2G23140 240 / 1e-70 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G67340 220 / 5e-64 ARM repeat superfamily protein (.1) AT3G54790 218 / 4e-63 ARM repeat superfamily protein (.1.2) AT1G23030 195 / 2e-55 PUB11 ARM repeat superfamily protein (.1) AT1G71020 191 / 3e-55 ARM repeat superfamily protein (.1.2) AT3G46510 184 / 2e-51 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT3G54850 172 / 3e-47 ATPUB14 plant U-box 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G015100 [exp] 642 / 0 AT4G16490 509 / 1e-178 ARM repeat superfamily protein (.1) Potri.014G016400 [exp] 238 / 2e-74 AT3G01400 557 / 0.0 ARM repeat superfamily protein (.1) Potri.005G144700 [exp] 249 / 6e-74 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.007G051000 [exp] 249 / 6e-74 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.002G118800 [exp] 234 / 9e-73 AT3G01400 521 / 0.0 ARM repeat superfamily protein (.1) Potri.005G225400 [exp] 238 / 5e-70 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G037700 [exp] 236 / 1e-69 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.001G238500 [exp] 199 / 6e-57 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.009G029600 [exp] 199 / 9e-57 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010499 [exp] 514 / 4e-180 AT4G16490 608 / 0.0 ARM repeat superfamily protein (.1) Lus10039047 [exp] 473 / 4e-165 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1) Lus10007738 [exp] 261 / 2e-83 AT3G01400 555 / 0.0 ARM repeat superfamily protein (.1) Lus10011514 [exp] 247 / 7e-72 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 245 / 3e-71 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10024899 [exp] 228 / 2e-66 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10022919 [exp] 210 / 9e-60 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011516 [exp] 206 / 4e-59 AT2G23140 410 / 5e-134 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10016565 [exp] 196 / 1e-55 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 194 / 1e-54 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Potri.016G010800.1 pacid=42810290 polypeptide=Potri.016G010800.1.p locus=Potri.016G010800 ID=Potri.016G010800.1.v4.1 annot-version=v4.1 ATGGTTTCCCTTGAAGATTCCCACTCCCAACACTCCACTTCCAGTCGCTTCCCCTTAACCTCTTCTCCTTCCTCCTCCAAAATCATCCACCGACACGTCG GCCGTTCCATGCGCACTGTCCGTTCTACTCTCTTTCAGACCGACTCATCCTTCAGCAACTCAGCTGCTTCCACTCCCTTTGTGTCTGAAAACTTGACTGA GTCTGTCATCGACATGCGACTCGGCGAACTCGCGGCAACCTTAAGCATACATAGTAATAATATTAGTAATATTAAGAATAAGACGTCGTCTTCGTCGGCA TCGCCAGCTAAATCTGCTGAGGAGTTTCTTGATATTTCAGAAGCTTTTTCTGATTTCTCAGGCTGTAGTTCTGATATTTCTGGAGAACTGCAACGTCTTG CATGCTTGCCGTCGTCTCCGCTGCATCGTGATGGAGAGTTGGAGAGGAAGAACCCATCAACGGAAATTGTAGCCGAGCCCTGTCATGGGTTTTTACAGAG AGAATCCTTTTCTACGGAAATCATTGAAAGTATTTCTCCCGAAGATCTTCAGCCGACGGTGAAGATCTGTGTTGATGGGTTGCAGTCCCCTTCGATTCTT GTCAGAAGATCTGCTGCGGAGAAGTTGAGGTTTTTGGCAAAGAATAGAGCGGATAACCGGGCGTTGATTGGTGAGTCGGGGGCGATTTCTGCTTTGATCC CTCTGCTTAAGCAAAGTGATCCGTGGGCGCAAGAACATGCGGTGACAGCCTTGTTGAATTTATCATTGTACGAGGAGAATAAGAAGAAGATTACGAAATC GGGTGCTATTAAGTCTCTTGTTTATGTGCTTAAAACTGGGACTGAAAATGCTAAGCAAAATGCGGCCTGTGCGTTGCTTAGTTTGGCGTTGATTGAAGTG AATAAGAGCTCGATTGGAGCTTGTGGAGCGATACCACCATTGGTATCGCTTCTAATTAATGGTTCTAATAGAGGAAAGAAAGATGCGTTGACGACATTGT ATAAGATTTGTTCAATAAAGCAGAATAAAGAGAGGGCTGTCATTGCTGGGGCAGTTAAGCCATTAGTGGGGATGGTGGTGGAGGCGGGGGCAGGGATGAT GGCTGAGAAAGCAATGGTGGTGTTGAGTAGTTTGGCTGCAATTCAAGAAGGGAGAGATGCTATTGTTGAAGAAGGCGGGATTGCTGCACTTGTTGAGGCT ATTGAAGATGGTTCTGTTAAAGGGAAAGAGTTTGCTGTTGTTACTTTGTTGCAATTGTGTAGTGATAGTGTTAGAAATCGTGGGTTGCTTGTTAGAGAAG GAGCGATTCCTCCTCTTGTTGCACTTTCCCAGAATGGGAGCATTCGCTCTAAGAACAAGGCTGAGAGGCTACTTGGGTACTTAAGAGAGCCAAGGCAAGA GGCTGCTTCATCTTCAAGCCCTTGA
AA sequence Show only first row Show all	>Potri.016G010800.1 pacid=42810290 polypeptide=Potri.016G010800.1.p locus=Potri.016G010800 ID=Potri.016G010800.1.v4.1 annot-version=v4.1 MVSLEDSHSQHSTSSRFPLTSSPSSSKIIHRHVGRSMRTVRSTLFQTDSSFSNSAASTPFVSENLTESVIDMRLGELAATLSIHSNNISNIKNKTSSSSA SPAKSAEEFLDISEAFSDFSGCSSDISGELQRLACLPSSPLHRDGELERKNPSTEIVAEPCHGFLQRESFSTEIIESISPEDLQPTVKICVDGLQSPSIL VRRSAAEKLRFLAKNRADNRALIGESGAISALIPLLKQSDPWAQEHAVTALLNLSLYEENKKKITKSGAIKSLVYVLKTGTENAKQNAACALLSLALIEV NKSSIGACGAIPPLVSLLINGSNRGKKDALTTLYKICSIKQNKERAVIAGAVKPLVGMVVEAGAGMMAEKAMVVLSSLAAIQEGRDAIVEEGGIAALVEA IEDGSVKGKEFAVVTLLQLCSDSVRNRGLLVREGAIPPLVALSQNGSIRSKNKAERLLGYLREPRQEAASSSSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16490			ARM repeat superfamily protein...		Potri.016G010800 [exp]	0	1
AT1G75060			unknown protein		Potri.001G101600 [exp]	5.09	0.7345
AT1G15080		ATLPP2, LPP2, A...	PHOSPHATIDIC ACID PHOSPHATASE ...		Potri.010G119300 [exp]	8.94	0.7143	Pt-PAP2.2
AT1G55360			Protein of Unknown Function (D...		Potri.001G003800 [exp]	10.39	0.6977
AT4G22730			Leucine-rich repeat protein ki...		Potri.003G115100 [exp]	19.97	0.7012
AT2G25910			3'-5' exonuclease domain-conta...		Potri.006G234000 [exp]	22.36	0.6405
AT5G51350		MORE LATERAL GR...	MORE LATERAL GROWTH1, Leucine-...		Potri.006G189000 [exp]	22.49	0.6469
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.004G147000 [exp]	28.61	0.6660
AT5G65670	AUX_IAA	IAA9	indole-3-acetic acid inducible...		Potri.002G108000 [exp]	28.72	0.6295	Pt-IAA8.4
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Potri.010G213200 [exp]	31.46	0.5985
AT4G27190			NB-ARC domain-containing disea...		Potri.001G446650 [exp]	32.90	0.6513

Compare expression of checked genes

Potri.016G010800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.