Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47530 497 / 2e-176 Auxin-responsive family protein (.1) AT4G17280 469 / 2e-165 Auxin-responsive family protein (.1) AT5G35735 384 / 5e-132 Auxin-responsive family protein (.1) AT3G25290 357 / 2e-121 Auxin-responsive family protein (.1.2) AT4G12980 347 / 2e-117 Auxin-responsive family protein (.1) AT3G59070 324 / 2e-107 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT5G48750 222 / 2e-70 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT2G04850 203 / 3e-61 Auxin-responsive family protein (.1) AT3G07570 127 / 4e-33 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G07390 114 / 4e-29 AIR12 Auxin-Induced in Root cultures 12, auxin-responsive family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G156600 [exp] 766 / 0 AT5G47530 497 / 2e-176 Auxin-responsive family protein (.1) Potri.010G156200 [exp] 724 / 0 AT5G47530 472 / 1e-166 Auxin-responsive family protein (.1) Potri.006G015000 [exp] 698 / 0 AT5G47530 513 / 0.0 Auxin-responsive family protein (.1) Potri.002G222700 [exp] 421 / 2e-146 AT5G35735 369 / 8e-126 Auxin-responsive family protein (.1) Potri.014G162000 [exp] 408 / 2e-141 AT5G47530 369 / 2e-126 Auxin-responsive family protein (.1) Potri.001G031600 [exp] 375 / 3e-128 AT5G47530 312 / 7e-104 Auxin-responsive family protein (.1) Potri.019G095800 [exp] 372 / 2e-127 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1) Potri.019G096300 [exp] 370 / 2e-126 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1) Potri.013G118300 [exp] 368 / 8e-126 AT5G47530 305 / 7e-101 Auxin-responsive family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017564 [exp] 468 / 1e-164 AT5G47530 419 / 8e-146 Auxin-responsive family protein (.1) Lus10010498 [exp] 459 / 6e-161 AT5G47530 412 / 1e-142 Auxin-responsive family protein (.1) Lus10002274 [exp] 440 / 5e-154 AT5G47530 432 / 4e-151 Auxin-responsive family protein (.1) Lus10012350 [exp] 437 / 1e-152 AT5G35735 418 / 3e-145 Auxin-responsive family protein (.1) Lus10001734 [exp] 426 / 2e-148 AT5G47530 422 / 9e-147 Auxin-responsive family protein (.1) Lus10025877 [exp] 289 / 2e-95 AT3G25290 387 / 2e-134 Auxin-responsive family protein (.1.2) Lus10006398 [exp] 276 / 7e-91 AT5G47530 276 / 2e-91 Auxin-responsive family protein (.1) Lus10038225 [exp] 239 / 1e-77 AT3G25290 283 / 6e-95 Auxin-responsive family protein (.1.2) Lus10001162 [exp] 225 / 1e-69 AT2G04850 563 / 0.0 Auxin-responsive family protein (.1) Lus10001736 [exp] 223 / 5e-69 AT2G04850 559 / 0.0 Auxin-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [poplar] [flax] 2heme_cytochrom PF03188 [poplar] [flax] Cytochrom_B561 Eukaryotic cytochrome b561 CL0328 [poplar] [flax] PF04526 [poplar] [flax] DUF568 Protein of unknown function (DUF568)
Representative CDS sequence Show only first row Show all	>Potri.016G010900.1 pacid=42809109 polypeptide=Potri.016G010900.1.p locus=Potri.016G010900 ID=Potri.016G010900.1.v4.1 annot-version=v4.1 ATGGCTACAATGCTAGAGCTTGTGTTATCTCTATCAGTTCTTATGTCTATGATTTTCTCATCGACTGCCCAGTCATGTAAGAGCTATGCTCTCTCTAGTA ACAAAACCTTTAGGGCGTGCAATGATCTTCCATACTTGAACTCATATCTTCACTGGAACTATGATTCATCATCAAACAAGCTTCAAATTGCTTATAGACA CACAGGAATCACTTCCTCTAGATGGGTTGCATGGGCTATCAATCCTACCTCAACTGGCATGGCTGGTTCACAAGCCCTTGTTGCATACCAACAAACTGAT GGAACTATGAGGGCTTACACATCACCTATCAGTAGCTACCAAACCTCATTGCAAGAAGGGAAACTTAGTTTTGATGTTTCAGATTTATCAGCTACATTAG CAAATAATGAGATAATCATATTTGCTACCATAGGACTTTCAAACACAAGCACTACTGTTAACCATGTCTGGCAAGATGGTGCAGTTTCTGGTAATGCTAC TCAGGTACATGCCACTAGTGGGGCTAATGTCCAATCCATGGGGACCTTAAACCTTCTTTCTGGAGAATCTAGTTCTACTGGAGGGAATGACAGGATTAGG AAGAGAAATATTCATGGGGTGCTAAATGCAGTCAGTTGGGGTATCTTGATGCCAATTGGGGCTTTCATAGCAAGGTATTTGAAGGCATTCAAATCTGCAG ACCCTGCATGGTTTTACCTCCATGTTGGTTGCCAATCCATAGCTTATATTGTTGGGGTTGCTGGATGGGGTACTGGTCTAAAACTTGGTAGTGAATCAGC CAGTATTCAATATGATGCTCATAGAACAATTGGCATCATCCTTTTCTGCCTTGGAACCCTTCAGGTGTTCGCTTTGCTTCTAAGGCCAAAACCTGATCAC AAGTACAGATTTTACTGGAACATCTACCACCACTTAGTTGGATACAGTGTTATCATCCTCAGCATCATCAACATATTCAAAGGATTCAGCATTTTGAACC CTGATAAGAAGTGGAAGAATGCATACATTGGTGTGATTGCTGCTTTGGCCTTCAATGCTGTCTGGTTGGAAGGCTATACATGGTATCTTGTGGTGAAAAG GAAAAGGTCAGAGATTGCTGGAAAGATGCCTCATGGCATGAATGGATCAAATGGGGTTAATGGGTTTGGTGCTAGACAGCACCAAGGGGTGTGA
AA sequence Show only first row Show all	>Potri.016G010900.1 pacid=42809109 polypeptide=Potri.016G010900.1.p locus=Potri.016G010900 ID=Potri.016G010900.1.v4.1 annot-version=v4.1 MATMLELVLSLSVLMSMIFSSTAQSCKSYALSSNKTFRACNDLPYLNSYLHWNYDSSSNKLQIAYRHTGITSSRWVAWAINPTSTGMAGSQALVAYQQTD GTMRAYTSPISSYQTSLQEGKLSFDVSDLSATLANNEIIIFATIGLSNTSTTVNHVWQDGAVSGNATQVHATSGANVQSMGTLNLLSGESSSTGGNDRIR KRNIHGVLNAVSWGILMPIGAFIARYLKAFKSADPAWFYLHVGCQSIAYIVGVAGWGTGLKLGSESASIQYDAHRTIGIILFCLGTLQVFALLLRPKPDH KYRFYWNIYHHLVGYSVIILSIINIFKGFSILNPDKKWKNAYIGVIAALAFNAVWLEGYTWYLVVKRKRSEIAGKMPHGMNGSNGVNGFGARQHQGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47530			Auxin-responsive family protei...		Potri.016G010900 [exp]	0	1
AT5G47530			Auxin-responsive family protei...		Potri.010G156600 [exp]	1.00	0.8857
AT5G47530			Auxin-responsive family protei...		Potri.010G156200 [exp]	1.41	0.8638
AT5G47635			Pollen Ole e 1 allergen and ex...		Potri.016G006200 [exp]	8.12	0.8338
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Potri.018G123100 [exp]	11.74	0.8022
AT5G22400			Rho GTPase activating protein ...		Potri.006G211200 [exp]	12.00	0.8279
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Potri.015G106000 [exp]	18.97	0.7708	AML1.8
AT2G40110			Yippee family putative zinc-bi...		Potri.008G067100 [exp]	19.39	0.7835
AT2G44500			O-fucosyltransferase family pr...		Potri.001G227000 [exp]	28.84	0.7557
					Potri.016G052100 [exp]	29.69	0.7841
AT1G53400			Ubiquitin domain-containing pr...		Potri.011G107700 [exp]	31.46	0.7277

Compare expression of checked genes

Potri.016G010900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.