Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53440 508 / 2e-163 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 501 / 6e-161 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G07650 481 / 3e-153 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29750 478 / 2e-152 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G29730 474 / 2e-151 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53420 471 / 2e-150 Leucine-rich repeat transmembrane protein kinase (.1) AT3G14840 471 / 1e-149 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29740 453 / 2e-142 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 427 / 5e-133 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 427 / 8e-133 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G012150 [exp] 1523 / 0 AT1G53440 574 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.010G155600 [exp] 1502 / 0 AT1G53440 596 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G011200 [exp] 1466 / 0 AT1G53440 600 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G011601 [exp] 1447 / 0 AT1G53440 571 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.010G155150 [exp] 1361 / 0 AT1G53440 543 / 1e-176 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G061500 [exp] 896 / 0 AT1G53440 577 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G092700 [exp] 628 / 0 AT1G53440 503 / 4e-161 Leucine-rich repeat transmembrane protein kinase (.1) Potri.006G014232 [exp] 622 / 0 AT1G53440 504 / 5e-161 Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G135500 [exp] 531 / 3e-172 AT1G07650 1324 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005550 [exp] 506 / 6e-163 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031374 [exp] 485 / 2e-153 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10015239 [exp] 471 / 5e-150 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10042505 [exp] 451 / 5e-141 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 449 / 5e-141 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 440 / 1e-138 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031199 [exp] 404 / 2e-124 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10010951 [exp] 383 / 9e-118 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005418 [exp] 336 / 3e-101 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10003711 [exp] 186 / 7e-52 AT1G70740 502 / 2e-178 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.016G011400.1 pacid=42808908 polypeptide=Potri.016G011400.1.p locus=Potri.016G011400 ID=Potri.016G011400.1.v4.1 annot-version=v4.1 ATGGCTAAGCTTCATCTTAAGCTCTTTCCTAAGCTTGTTTCCTCTCTTGCCGTTCTTCTTCTTTGTCAATTTGGCTATGTAGTTTGTCAATCAACAGGTT TCTCTGACAGCCGGTTGCCTGCAGATGAAGAAAAGGCTTTGGATGACTTGTTGAAAACGTTAGAGTGGGGTTTTCATCCAAATATCTCACGCTCGGCTTG TTCCTCTAATTTTGAATACATCAAATGCGATTGCAACAGAACAGTTTGTCATGTCACTCGCCTAACGCTCCCAGACCAGGACTTAACTGGACAGATAAAT GCTGAAGCCTTGGCTAGTCTCGTTCACCTAAGAGCAATTGATTTGTCCAAGAATCAACTTCATGGTAGCATCCCTCTCACCTTGGGGAACTTGAGTTCAC TCACCCGTCTCGATCTCTCCACAAACTTCCTCAATGGCTACATACCTTCATCCTTGGGGAATTTGTCGTCCCTTCAATATCTCCGTCTCTCGAGAAACTT CCTCAATGACTTCATACCTTCATCTTTGGGGAATTTGTCGTCCCTCGAATATCTGAGTTTGTCGTATAATAAGTTATTTGGTCAAATCCCTAAAGAATTG GGCAACCTCTCTAATCTCCTATCTATGTACTTGGACTTCAATGAACTCACTGGTCAGCTTCCACCAGAACTTGGAAGATTGGGATCTCTTGGTTATTTAG GGTTGAGCTCCAACAATTTGAGTGGACCACTGCCGGAAAATTATGCCAACTTTACGGGATTGCAGTGGTTTAGCGTAGCTGGGAACCGTTTGACCGGTCA AGTACCAAGTTTCATTGCGGATTGGACTGAACTCAATAGGCTGTCCCTCTCCGGGAATGATTTTGAAAGGGAGCTGCCTCTTGAAAGTATTTTTAACATG TCAAATCTCCGATACTTGTTTGTTAGTGATGTAAGAAGCTCCGGTTTCCCAAAAAATGCAAATATGAAGAAAATAAGATACCTGATGATAAGGAATTGCT CAATAAGTGGTGAAATCCCCCCGTACATTGGTGATTGGTCAAGGTTAAGATACCTAGACTTGAGCTTTAACAGCTTAACTGGTGGAATACCAGATTCCAT GAAAAAGCTGAATTTAAGTAAGATGTTTCTTACAGGAAATATGCTTAATGGCACTGTACCTTACTGGGTTCCTGATACCATTGAAGACAAGGCGGACTTG TCATATAATAATTTTGAAATTCCACGTGATGGTCCGAAGAAAGGAGAAGGAAAGCTGAACATTCAACCAAACAGGAATTCTATACGTAATTTGATAAAAA AATGTCGGCGAAAACCAAAGTACAATTCCTTATATATAAATTGTGGAGGAGGAGAGACAGTTGTTGATGGGAAAGTGTTTGAAGCAGACAGTACAACATC AAATTACAATTTAGCTCCAAGAAAAAATTGGGCTTATTCTTGTTCTGGAGACTTCGGATCGAAAACTTACGATTCCAGTGATTACATAAAAAACGTGGAA TGTGAAGTTTGTGATTCTGCTGGGACACAGTTATACAATTCAAGTCGCCTCTGCCCTCTTTCTCTGACATATTACGGCTTCTGTTTATTTAAAGGAAATT ACACTGTGAAACTTTACTTCGCTGAAACTGTTTACCAAAGCGATGCAGATTATTCGAATTTAGGGAAACGTGTTTTTGATGTATATATACAGGGGAAGAG AGCACTAAAAGACTTCAACATAAAAGAAATGGCCAGCGGCACCAATAAGACATGGACTGCAAATTTCACAGCATATGTAGGAGATGATTATCTATTGACT ATCGATTTTTTCTGGGCTGGCAAAGGAACTTTCCAGGAGCCAAGTTTTTCCTATGCACCTGCTGCACTGTCTTTAAAGGGACCCCTTGTGTCAGGCATTT CCGTAACTGCAAACTTCAAAGTTGGCAAGGGACTATCTCCTTCACAAATTGCAGGGATTACTGTAGGTTCAGTATTTGCTTCTGTACTTCTGTCGGCTTA CATGTGGAAAATGGGCTGGCAGCAGCAAAGCGATTTGAATGAGGTCCAAGGAGATGAAAAATCTTTCGCCCTCAAACAAATAATCGATGCTACTCGAAAA TTTAGCCCCAAAATGGAGATTGGCAGGGGACGCTTTGGAATAGTATACGAGGCTGAATTGCCGAACAAGAGAAAATTAGCAGTGATGAAGATTTCTCCTC GTAATTCAAAGCAACAAGGAAAAGATGAATTACAAGGGGAAATCTCCAAACTGAAATCTTTGCATCATGAGAATCTTGTTCAATTATTGCGTGGCTATTC TAATAAAGACCTGCATCTGCTAGTAAATGAGCAGAAAGGCTCCCTTCAACGTGCGTTGTTCGAACCAGATTCCACGACAAAACTTGATTGGAAAGCTAGA TTTGATATCTGTCTGGGAATAGCAAGAGGTTTGACGTATTTGCATGAAGAGAAAAGGATTGTTCATGGAAACATAAATCCTAGTAATATTATGCTTGATG ATGACTCTCTTACGGCCAAGTTGTCTGCCTTTGGATTGGCAACGCTTTGTGATGAGGAAGATCCATTTATGACCATCGAAGCAAAAGAGTCTCGAGTTTA CATGGCACCTGAGTATTCAATGGGAAAAACAATAGATACTGTTAAAGCTGATGTTTACAGTTTCGGAGTTGTCCTCCTCGAAATAGTTAGCGGGACAGTT AGTGCAGAATATACACCCAATCAAGAAGAAGCTAAGTTTCTTCTGGATAAAGCTAGTGTTTTGCACCATAAGGGAAGAATCCTTGACTTGGTGGACAAGA AATTAGCATCCAGTTACGACAGGAAGCAAGCTCTCACTGTTTTGCTCTTGGCAATGAAGTGCGTTAATCTGTCTCCTACTCTCAGGCCTAAAATGTCCGA AGTCGTCAGTGTACTTGAAGATGAGAAAAGAATCGATGCGATTTCCGAAGGCGATGATACTCCATCAACAAATATTGGAGGACTGTGCGGTGCGTTTTCC AGTGTGTTGGAAATAGATCCAATTTCTTAG
AA sequence Show only first row Show all	>Potri.016G011400.1 pacid=42808908 polypeptide=Potri.016G011400.1.p locus=Potri.016G011400 ID=Potri.016G011400.1.v4.1 annot-version=v4.1 MAKLHLKLFPKLVSSLAVLLLCQFGYVVCQSTGFSDSRLPADEEKALDDLLKTLEWGFHPNISRSACSSNFEYIKCDCNRTVCHVTRLTLPDQDLTGQIN AEALASLVHLRAIDLSKNQLHGSIPLTLGNLSSLTRLDLSTNFLNGYIPSSLGNLSSLQYLRLSRNFLNDFIPSSLGNLSSLEYLSLSYNKLFGQIPKEL GNLSNLLSMYLDFNELTGQLPPELGRLGSLGYLGLSSNNLSGPLPENYANFTGLQWFSVAGNRLTGQVPSFIADWTELNRLSLSGNDFERELPLESIFNM SNLRYLFVSDVRSSGFPKNANMKKIRYLMIRNCSISGEIPPYIGDWSRLRYLDLSFNSLTGGIPDSMKKLNLSKMFLTGNMLNGTVPYWVPDTIEDKADL SYNNFEIPRDGPKKGEGKLNIQPNRNSIRNLIKKCRRKPKYNSLYINCGGGETVVDGKVFEADSTTSNYNLAPRKNWAYSCSGDFGSKTYDSSDYIKNVE CEVCDSAGTQLYNSSRLCPLSLTYYGFCLFKGNYTVKLYFAETVYQSDADYSNLGKRVFDVYIQGKRALKDFNIKEMASGTNKTWTANFTAYVGDDYLLT IDFFWAGKGTFQEPSFSYAPAALSLKGPLVSGISVTANFKVGKGLSPSQIAGITVGSVFASVLLSAYMWKMGWQQQSDLNEVQGDEKSFALKQIIDATRK FSPKMEIGRGRFGIVYEAELPNKRKLAVMKISPRNSKQQGKDELQGEISKLKSLHHENLVQLLRGYSNKDLHLLVNEQKGSLQRALFEPDSTTKLDWKAR FDICLGIARGLTYLHEEKRIVHGNINPSNIMLDDDSLTAKLSAFGLATLCDEEDPFMTIEAKESRVYMAPEYSMGKTIDTVKADVYSFGVVLLEIVSGTV SAEYTPNQEEAKFLLDKASVLHHKGRILDLVDKKLASSYDRKQALTVLLLAMKCVNLSPTLRPKMSEVVSVLEDEKRIDAISEGDDTPSTNIGGLCGAFS SVLEIDPIS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53440			Leucine-rich repeat transmembr...		Potri.016G011400 [exp]	0	1
AT4G13440			Calcium-binding EF-hand family...		Potri.019G026820 [exp]	1.00	0.9943
					Potri.001G004900 [exp]	4.69	0.9893
					Potri.018G090350 [exp]	5.74	0.9877
AT4G13440			Calcium-binding EF-hand family...		Potri.019G028800 [exp]	8.06	0.9857
AT1G74170		AtRLP13	receptor like protein 13 (.1)		Potri.003G041600 [exp]	9.74	0.9654
					Potri.019G073801 [exp]	9.79	0.9860
AT3G22060			Receptor-like protein kinase-r...		Potri.017G039883 [exp]	10.58	0.7827
					Potri.002G252050 [exp]	10.95	0.9860
					Potri.014G003683 [exp]	12.00	0.9860
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.003G041400 [exp]	14.42	0.9490

Compare expression of checked genes

Potri.016G011400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.