Plant FIBer expression Database

Potri.016G011500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATMG00480 39 / 0.0001 ATP8, ATMG00480.1, ORFB ATP SYNTHASE 8, Plant mitochondrial ATPase, F0 complex, subunit 8 protein (.1)
AT2G07707 39 / 0.0001 Plant mitochondrial ATPase, F0 complex, subunit 8 protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.016G011500.1 pacid=42809049 polypeptide=Potri.016G011500.1.p locus=Potri.016G011500 ID=Potri.016G011500.1.v4.1 annot-version=v4.1
ATGTTGATGGAGAAAATCCTGCTAGAAACAGGAAGTTGGCAGAGGCAGAATCGGCATCTATCCTGCCTGCTCGAAAGCCTGCCTTGGCTAGGCTGCTTTA
GATTTAGAATAATGGGCTCTGGGCCTTGTGGGAGAGTGGGGATAAATTTACTTATTTTACACCATTCTTCTGGTAATGCCTTTTTCTTCTTTACTTTGTA
TATAAAAATATGCGATGATGGAGATGGAGTACTTGGGATCAGCTGA
AA sequence
>Potri.016G011500.1 pacid=42809049 polypeptide=Potri.016G011500.1.p locus=Potri.016G011500 ID=Potri.016G011500.1.v4.1 annot-version=v4.1
MLMEKILLETGSWQRQNRHLSCLLESLPWLGCFRFRIMGSGPCGRVGINLLILHHSSGNAFFFFTLYIKICDDGDGVLGIS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
ATMG00480 ATP8, ATMG00480... ATP SYNTHASE 8, Plant mitochon... Potri.016G011500
[exp]
0 1
ATMG00665 NAD5.2, ATMG006... NADH DEHYDROGENASE 5.2, NADH D... Potri.015G051300
[exp]
2.82 0.9748
ATMG00640 ATMG00640.1, OR... hydrogen ion transporting ATP ... Potri.007G061641
[exp]
8.12 0.9741
ATMG00070 ATMG00070.1, NA... NADH dehydrogenase subunit 9 (... Potri.013G066660
[exp]
9.48 0.9686
ATMG00640 ATMG00640.1, OR... hydrogen ion transporting ATP ... Potri.007G062602
[exp]
10.58 0.9718
ATMG01320 NAD2.2, ATMG013... NADH DEHYDROGENASE 2.2, NADH d... Potri.007G062482
[exp]
11.22 0.9676
AT2G07689 NADH-Ubiquinone/plastoquinone ... Potri.007G062522
[exp]
13.07 0.9650
Potri.003G079550
[exp]
15.87 0.8734
AT2G35750 unknown protein Potri.006G016001
[exp]
15.87 0.9320
ATMG01320 NAD2.2, ATMG013... NADH DEHYDROGENASE 2.2, NADH d... Potri.007G062442
[exp]
18.76 0.9621
ATMG00580 ATMG00580.1, NA... NADH dehydrogenase subunit 4 (... Potri.007G061881
[exp]
19.59 0.9599

Potri.016G011500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.