Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53440 570 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 559 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 545 / 8e-178 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29750 541 / 3e-176 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G53420 534 / 3e-174 Leucine-rich repeat transmembrane protein kinase (.1) AT1G07650 499 / 3e-160 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29730 492 / 4e-158 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29740 481 / 7e-153 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 465 / 4e-147 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 461 / 6e-146 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G011200 [exp] 1665 / 0 AT1G53440 600 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.010G155600 [exp] 1655 / 0 AT1G53440 596 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G012150 [exp] 1594 / 0 AT1G53440 574 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.010G155150 [exp] 1562 / 0 AT1G53440 543 / 1e-176 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G011400 [exp] 1457 / 0 AT1G53440 507 / 2e-163 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G061500 [exp] 992 / 0 AT1G53440 577 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G092700 [exp] 717 / 0 AT1G53440 503 / 4e-161 Leucine-rich repeat transmembrane protein kinase (.1) Potri.006G014232 [exp] 699 / 0 AT1G53440 504 / 5e-161 Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G135500 [exp] 590 / 0 AT1G07650 1324 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005550 [exp] 547 / 8e-179 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031374 [exp] 532 / 2e-171 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10015239 [exp] 511 / 2e-165 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10042505 [exp] 491 / 2e-156 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 484 / 4e-154 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 470 / 4e-150 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031199 [exp] 461 / 2e-145 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10010951 [exp] 426 / 1e-133 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005418 [exp] 377 / 1e-116 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10035605 [exp] 234 / 1e-63 AT5G01950 1126 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.016G011601.1 pacid=42809102 polypeptide=Potri.016G011601.1.p locus=Potri.016G011601 ID=Potri.016G011601.1.v4.1 annot-version=v4.1 ATGGCTAAGCTTTATCTTAATAAGCTCTTTCCTAAGCTTGTTTCCTCTCTTGCCGTTCTTCTTCTTTGTCAATTTGGCTATGTAGCCTGTCAACCAACGA TGAAGGTATATAGTCCAAGCAGAAACGCCACGTTGCCTGCAGATGAAGCAAAGGCTTTGGGTGAATTGATGACCACGTTAGGGTGGGGTTTTCAACAATT CTCACGCTCGTCTTGTGACAATAATTATCGAGGCATCAAATGCAATTGCACTTATGAGAACAGCACAGTTTGTCACGACACCGGCCTAGATCTCTCAAAC CGAGAATTAGACGGACGAATCCACGCTGAAGCCTTGACTAGTCTCGATTTCCTAGAAGAAATTGATTTGTCCCACAATCAACTTTATGGTAGCATCCCTG TCACCATGGGGAACTTGCCTTCACTCACCTCTCTCGATCTCTCTACAAACTTCCTCAATGGCTCCATACCTTCATCCTTGGGGAATTTGTCGTCCCTCCA AATTCTCGATCTCTCCACAAACTTTCTCAGTGGCTCCATACCTCCATCTTTGAGGAATTTATCATCCCTCAAATATCTGTTTTTGTGGTATAATATGTTA TCAGGTCAAATCCCTAAAGAATTGGGCAACCTCTCTAATCTCCTACAGATGACCTTGGGCTTCAATGAACTCACTGGTCAGCTTCCACCAGAACTTGGAA GATTGAGATCTCTAAATGCTTTAGAGTTGAGCTCCAACAATTTGAGTGGAGAACTGCCGGGAAATTACGCCAACTTTACTTCGGATCAATTGCAGTTTTT TAGCGTAGCTGGGAACCGTTTGACCGGTCAAGTACCAAGTTTCATTGCGAATTGGACTGGACTCGGTTATCTGTACCTCTCCGGGAATGATTTTGAAGGA CAGCTGCCTCTTGAACTTCTTTTTAACATGTCAAAACTCGAATACTTGGTGGTTAGTGATGTAAGAAGCTCGGCCGGTTTCCCTTTCCCAAAACATGCAA ACATGAAGGGAATAAGATACCTGGTGATAAGGAATTGCTTAATAAGTGGTGGAATCCCCCCGTACATTGGTCATTGGTCATCGTTAACCTACCTAGACTT GAGCTTTAACAGCTTAACTGGTGGAATACCAGATTCCATGAAAAAGCTGAATTTAAGTAAGATGTTTCTTACAGGAAATATGCTTAATGGCACAGTACCT TCCTGGGTTCCTCATACCATTGAAGACAAGGCGGACTTGTCATATAATAATTTTGAAATTTCACGTGATGGTACGAAGAAAGGAGAAGGAAAGCTGAACA TTCAACCAAACAGGAATTCTATGCGTGATTTGATAAAAAAATGTCGGGGAAAACCAAAGTACGATTCCTTATATATAAATTGTGGAGGAGCAGACAAAGT GGTTGATGGGAAAGAGTTTGAAGCAGACAGTGCAACATCAAATTACTATTCAGCTCCAAGAGAAAATTGGGCTTATTCTTGTTCTGGAGACTTTGGTTCG GAAACTTATGATTCCAGTTATTACATAAAAAACGTGGAATGTGCAGTTTGTGATTCTGCTGGGACACTTCTTTACAACTCAACTCGCCTCTGCCCTCTTT CTCTGACATATTACGGCTTCTGTTTATTTAAAGGAAATTACACTGTCAAGCTTTACTTCGCTGAAACTGTTTACCAAAATGATGAAGATTACTCGAATTT AGGGAAACGTGTTTTTGATGTATATATACAGGGGAAGAGAGCACTAAAAGACTTCAACATTAAAGAAATGGCCAGCGGCACCAATAAGACATGGACTGCA AGTTTCACAGCATATGTAGGAGATGATCATCTATTGACTATCGATTTTTTCTGGGCTGGCAAAGGATCTTTCCCGTTGCCAGATTTTTCCAATTTACCTG CTGCCCTGTCTCTGAATGGACCCCTTGTGGCAGGCATTTCCGTAACTGCAAACTTCAAAGTTGGTGGCAAGGGACTATCTCCTTCACAAATTTCAGCGAT TACCGCAGGTTCAGTATTTGCTCCTCTACTTCTGTTGGCTTTCATGTGGAAAATGGGCTGGCTGCGGAAAAGCGAGTTGGATGAAATAACCATTGAGGTC CAAGGAAAATCTTTCACCCTCAAACAAATAATCGATGCTACTCGAAAATTCAGCCCCAAAATGGAGATTGGCAGGGGACGCTTTGGAATAGTATACAAGG CTGAATTGCCGAATGATATAAAATTAGCAGTGAAGAAGATTTCTCCTCATTCAAAGCAACAAGGAAAAGATGAATTACAAAGGGAAATCTTCAACCTGAA ATCTTTGCATCATGAGAATCTTGTTCAATTGTTGGATGGCTACTCTAATAAAGGCCTGCATCTGCTAGTATATGACTATATGCATAAAGGCTCCCTTCAC CATGCGTTGTTCGAACCAAATTCCACGACAAAACTTGATTGGAAAGCTAGATTTGGTATCTGTCTGGGAATAGCGAGAGGTTTGAAGTATTTGCATGAAG AGAAAAGGTTCAAGATTGTTCATGGAAACATAAAACCTAGTAATATTATGCTTGATAACTCTCTTACGGCCAAGTTGTCTGACTTTGGATTGGCAACGCT TTGTGATGAGGAAGATCCATTTATGACCATCAAAGCAAAAGGGTCGCGAGTTTACATGGCACCTGAGTATTCAATGGGAAAAGCAATAACTGTTAAAGCT GATGTTTACAGTTTCGGAGTTGTCCTTCTCGAAATAGTTAGCGGGAGAGTTAGTGCAGATTACATAACAAATCAAGAAGCTGAGTTTCTTCTGGATAAAG CTGGTGTTTTGCACGATAAGGGAAGAATCCTTGACTTGGTTGACAAGAAATTAGCATCCAGTTACGACAGAAAGCAAGCTCTCATTGTTTTGTTGTTAGC AATGAAGTGTGTTAATCTGTCTCCTACTCTGAGGCCTAAAATATCTGAAGTCGTCAGTGTACTTGTAGGTGAGAAAAGAATTGATGAGATTTCCGAAGCT GATACTTCATCAGCAAATATTGTCCTTCCAGGGTGTTGGAAATAG
AA sequence Show only first row Show all	>Potri.016G011601.1 pacid=42809102 polypeptide=Potri.016G011601.1.p locus=Potri.016G011601 ID=Potri.016G011601.1.v4.1 annot-version=v4.1 MAKLYLNKLFPKLVSSLAVLLLCQFGYVACQPTMKVYSPSRNATLPADEAKALGELMTTLGWGFQQFSRSSCDNNYRGIKCNCTYENSTVCHDTGLDLSN RELDGRIHAEALTSLDFLEEIDLSHNQLYGSIPVTMGNLPSLTSLDLSTNFLNGSIPSSLGNLSSLQILDLSTNFLSGSIPPSLRNLSSLKYLFLWYNML SGQIPKELGNLSNLLQMTLGFNELTGQLPPELGRLRSLNALELSSNNLSGELPGNYANFTSDQLQFFSVAGNRLTGQVPSFIANWTGLGYLYLSGNDFEG QLPLELLFNMSKLEYLVVSDVRSSAGFPFPKHANMKGIRYLVIRNCLISGGIPPYIGHWSSLTYLDLSFNSLTGGIPDSMKKLNLSKMFLTGNMLNGTVP SWVPHTIEDKADLSYNNFEISRDGTKKGEGKLNIQPNRNSMRDLIKKCRGKPKYDSLYINCGGADKVVDGKEFEADSATSNYYSAPRENWAYSCSGDFGS ETYDSSYYIKNVECAVCDSAGTLLYNSTRLCPLSLTYYGFCLFKGNYTVKLYFAETVYQNDEDYSNLGKRVFDVYIQGKRALKDFNIKEMASGTNKTWTA SFTAYVGDDHLLTIDFFWAGKGSFPLPDFSNLPAALSLNGPLVAGISVTANFKVGGKGLSPSQISAITAGSVFAPLLLLAFMWKMGWLRKSELDEITIEV QGKSFTLKQIIDATRKFSPKMEIGRGRFGIVYKAELPNDIKLAVKKISPHSKQQGKDELQREIFNLKSLHHENLVQLLDGYSNKGLHLLVYDYMHKGSLH HALFEPNSTTKLDWKARFGICLGIARGLKYLHEEKRFKIVHGNIKPSNIMLDNSLTAKLSDFGLATLCDEEDPFMTIKAKGSRVYMAPEYSMGKAITVKA DVYSFGVVLLEIVSGRVSADYITNQEAEFLLDKAGVLHDKGRILDLVDKKLASSYDRKQALIVLLLAMKCVNLSPTLRPKISEVVSVLVGEKRIDEISEA DTSSANIVLPGCWK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53440			Leucine-rich repeat transmembr...		Potri.016G011601 [exp]	0	1
AT1G53440			Leucine-rich repeat transmembr...		Potri.010G155150 [exp]	1.00	0.9956
AT1G53440			Leucine-rich repeat transmembr...		Potri.016G012150 [exp]	2.00	0.9925
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.019G004400 [exp]	5.00	0.9915
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Potri.009G108766 [exp]	5.47	0.9836
AT5G06370			NC domain-containing protein-r...		Potri.013G043100 [exp]	7.00	0.9876
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.008G098850 [exp]	7.68	0.9704
AT3G28150		AXY4L, TBL22	ALTERED XYLOGLUCAN 4-LIKE, TRI...		Potri.011G144100 [exp]	8.36	0.9870
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Potri.006G236200 [exp]	10.53	0.9748
					Potri.006G271692 [exp]	10.58	0.9837
AT1G03670			ankyrin repeat family protein ...		Potri.018G077633 [exp]	10.95	0.9770

Compare expression of checked genes

Potri.016G011601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.