Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53440 574 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 546 / 4e-178 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G07650 541 / 2e-176 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 518 / 2e-167 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 508 / 2e-164 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29750 507 / 2e-163 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G29730 476 / 3e-152 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29740 465 / 8e-147 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 463 / 2e-146 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 446 / 4e-140 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G011200 [exp] 1619 / 0 AT1G53440 600 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.010G155600 [exp] 1596 / 0 AT1G53440 596 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G011601 [exp] 1559 / 0 AT1G53440 571 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G011400 [exp] 1495 / 0 AT1G53440 507 / 2e-163 Leucine-rich repeat transmembrane protein kinase (.1) Potri.010G155150 [exp] 1483 / 0 AT1G53440 543 / 1e-176 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G061500 [exp] 971 / 0 AT1G53440 577 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.006G014232 [exp] 662 / 0 AT1G53440 504 / 5e-161 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G092700 [exp] 660 / 0 AT1G53440 503 / 4e-161 Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G135500 [exp] 605 / 0 AT1G07650 1324 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005550 [exp] 541 / 2e-176 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031374 [exp] 528 / 1e-169 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10015239 [exp] 505 / 5e-163 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10038153 [exp] 495 / 3e-158 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 493 / 1e-156 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 473 / 2e-151 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031199 [exp] 440 / 7e-138 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10010951 [exp] 412 / 2e-128 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005418 [exp] 387 / 4e-120 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10042460 [exp] 217 / 3e-62 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.016G012150.2 pacid=42809243 polypeptide=Potri.016G012150.2.p locus=Potri.016G012150 ID=Potri.016G012150.2.v4.1 annot-version=v4.1 ATGGCTAAGCTTTATCTTAAGCTCTTTCTTAAGCTTGTTTCCTCTCTTGCCGTTCTTCTTCTTCTTTGTCAATTTGGCTATGTAGCCTGTCAACCAACAG GTTTCTCTAACAGCAGCCGGTTGCCTGATGGCGAAGCAAGGGCTTTGGAAGACTTGTTGAAAAAGTTAGAGTGGGGTTTTCATCCAAATATCGCACGCTC GGCTTGTTCCTCTAATTTTGAATACATCAAATGCGATTGCACTTATGAGAACAGAACAGTTTGTCATGTCACCCGCCTAACGCTCCCAGACCAGGACTTA ACTGGACAAATAAATGCTGAAGCCTTGGCTAGTCTCGTTCACCTAAAAGCAATTGATTTGTCCAAGAATCAACTTCATGGTAGCATCCCTCTCACCTTGG GGAACTTGCGTTCACTCACCCGTCTCGATCTCTCCGAAAACTTCCTTAATGGCTCCATACCTTTATCTTTGGGGAATTTGTTATCCCTCAAATATCTTGA TCTCTCCCATAACTTCCTCAATGGCTCCATACCTTCATCTTTGAAGAATTTGTTGTCTCTCCACTACTTCGCTCTCTCCGGTAACTTCCTCAATGGCTCC ATACCTCCATCTTTGGGGAATTTGTTGTCCCTCCTTGTTATGGACTTGGGCTTCAATGAACTCATTGGTCAGCTTCCACCAGAACTTGGAAGATTGAGTT CTCTTCGTTATTTAGGGTTGAGCTCCAACAATTTGAGTGGAGAACTGCCCGGAAATTATGCCAACTTTACTTCGAAATTGCAGTGGTTTAGCGTAGCTGG GAACCGTTTGACTGGTCAAATACCAAGGTTCATTGCGAATTGGACTGAACTCTATTACCTGTCCCTCTCCGGAAATGATTTTGAAGGAGAGCTTCCCCTT GAACTTCTTTTTAACATGTCAAATCTCCAATACTTGTTTGTTAGTGATGTAAGAAGCTCCGGTTTCCCTTTCCCAAAATATGCAAACATGACGGAAATAG AATACCTGGTGATAAGGAATTGCTCAATAAGTGGTGAAATCCCCCCGTACATTGGTAATTGGTCATGGTTAACATACCTAGACTTGAGCTTTAACAGCTT AACTGGTGGAATACCAGATTCCATGAAAAAGCTGAATTTAACTAAGATGTTTCTCACAGGAAATATGCTTAGTGGCACAGTACCTCCCTGGCTTCCTCAT AAAATTGAGGACAAGGCGGACTTGTCATATAATGATTTTGAAATATCACGTGATGGTCCGAAGAAAGGAGAAGGAAAGCTGAACATTCAACCGAACAGGA ATTCTATACGTGATTTGAAAAATAAATGTCGGGGAAAACCAAAGTACAATTCCTTATATATAAATTGTGGAGGAGGAGAGACAGTTGTTGATGGGAAAGT GTTTGAAGCAGACAGTACAACATCAAATTACTATAAAGCCCCAACAGAAAATTGGGCTTATTCATGTTCTGGAGACTTTGGTTCGGAAACTTATGATTCC AGTGATTACATAAAAAACGTGGAATGTGGAGATTGTGATTCTGCTGGGACACAGTTATACAATTCAAGTCGCCTCTGCCCTCTTTCTCTGACATATTACG GCTTCTGTTTATTTAAAGGAAATTACACTGTGAAGCTTTACTTCGCTGAAACTGTTTACCAAAGTGATAAAGATTACTCGAATTTAGGGAAACGTGTTTT TGATGTATATATACAGGGGAAGAGAGAACTAAAAGACTTCAACATAAAAGAAAAGGCCAGCGGCACCAATAAGACATGGACTGAAAATTTCACAGCATTT GTAGGAGATGATCATCTATTGAATATCCATTTTTTCTGGGCTAGCAAAGGATCATCAAGTTTTTCCATTGCACCTGCTGCACTGTCTCTAAATGGACCCC TTGTGGCAGGCATTTCCGTAACTGCAAACTTCAAAGTTGGCGGCAAGAAACTATCTCCTTCACAAATTGCAGGGATTACTGCAGGTTCAGTATTTGCTCC TCTACTTCTGTTGGCTTTCATGTGGAAAATGGGCTGGCTGCGGAAAAGCGAGTTGGATGAAATAACTATTGAGGTCCAAGGAAAATCTTTCACCCTCAAA CAAATAATCGATGCTACTCGAAATTTTAACCTCAAAATGGAGATTGGCAGGGGACGCTTTGGAATAGTATACAAGGCTGACTTGCCGAATGAGATAAAAT TAGCAGTGAAGAAGATTTCTCCTCAATCAAAGCAACAAGGAAAAGATGAATTACAAAGGGAAATCTTCAACCTGAAATCTTTGCATCATGAGAATCTTGT TCAATTGTTGGATGGCTATTCTATTAAAGACCTGCATCTGCTAGTATATGACTACATGCATAAAGGCTCCCTTCACCATGCGTTGTTTGAACCAAATTCC TCAACAAAACTTGATTGGAAAGCTAGATTTGATATCTGTCTGGGAATAGCGAAAGGTTTGAAGTATTTGCATGAAGAGAAAAGGTTCAAGATTGTTCATG GAAACATAAAACCTAGTAATATTATGCTTGATAACTCTCTTACGGCCAAGTTGTCTGACTTTGGATTGGCAACGCTTTGTGATGAGGAAGATCCATTTAT GGCCATCAAAGCAAAAGGGTCGCGAGTTTACATGGCACCTGAGTATTCAATGGGAAAAGCAATAACTGTTAAAGCTGATGTTTACAGTTTCGGAGTTGTC CTACTCGAAATAGTTAGCGGGAAAGTTAGTGCAGATTACACACCAAACCAAGAAGCTGAGTTTCTTCTGGATAAAGCTGGTGTTTTGTACGATAAGGGAA GAATCCTTGACTTGGTTGACAAGAAATTAGCATCCAGTTACGACAGGAAGCAGGCTCTGACTGTTTTGCTCTTAGCAATGAAGTGTGTTAATCTGTCTCC TACTCTCAGGCCTAAAATGTCCGAAGTCGTCAGTGTACTTGTAGGTGAGAAAAGAATCGATGAGATTTCCGAAGCTGATACTTCATCAGCAAATATTGGA GGATTGTGCGGTGCGTGTTCCATGGTGTTGGAAATATAG
AA sequence Show only first row Show all	>Potri.016G012150.2 pacid=42809243 polypeptide=Potri.016G012150.2.p locus=Potri.016G012150 ID=Potri.016G012150.2.v4.1 annot-version=v4.1 MAKLYLKLFLKLVSSLAVLLLLCQFGYVACQPTGFSNSSRLPDGEARALEDLLKKLEWGFHPNIARSACSSNFEYIKCDCTYENRTVCHVTRLTLPDQDL TGQINAEALASLVHLKAIDLSKNQLHGSIPLTLGNLRSLTRLDLSENFLNGSIPLSLGNLLSLKYLDLSHNFLNGSIPSSLKNLLSLHYFALSGNFLNGS IPPSLGNLLSLLVMDLGFNELIGQLPPELGRLSSLRYLGLSSNNLSGELPGNYANFTSKLQWFSVAGNRLTGQIPRFIANWTELYYLSLSGNDFEGELPL ELLFNMSNLQYLFVSDVRSSGFPFPKYANMTEIEYLVIRNCSISGEIPPYIGNWSWLTYLDLSFNSLTGGIPDSMKKLNLTKMFLTGNMLSGTVPPWLPH KIEDKADLSYNDFEISRDGPKKGEGKLNIQPNRNSIRDLKNKCRGKPKYNSLYINCGGGETVVDGKVFEADSTTSNYYKAPTENWAYSCSGDFGSETYDS SDYIKNVECGDCDSAGTQLYNSSRLCPLSLTYYGFCLFKGNYTVKLYFAETVYQSDKDYSNLGKRVFDVYIQGKRELKDFNIKEKASGTNKTWTENFTAF VGDDHLLNIHFFWASKGSSSFSIAPAALSLNGPLVAGISVTANFKVGGKKLSPSQIAGITAGSVFAPLLLLAFMWKMGWLRKSELDEITIEVQGKSFTLK QIIDATRNFNLKMEIGRGRFGIVYKADLPNEIKLAVKKISPQSKQQGKDELQREIFNLKSLHHENLVQLLDGYSIKDLHLLVYDYMHKGSLHHALFEPNS STKLDWKARFDICLGIAKGLKYLHEEKRFKIVHGNIKPSNIMLDNSLTAKLSDFGLATLCDEEDPFMAIKAKGSRVYMAPEYSMGKAITVKADVYSFGVV LLEIVSGKVSADYTPNQEAEFLLDKAGVLYDKGRILDLVDKKLASSYDRKQALTVLLLAMKCVNLSPTLRPKMSEVVSVLVGEKRIDEISEADTSSANIG GLCGACSMVLEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53440			Leucine-rich repeat transmembr...		Potri.016G012150 [exp]	0	1
AT1G53440			Leucine-rich repeat transmembr...		Potri.016G011601 [exp]	2.00	0.9925
AT1G53440			Leucine-rich repeat transmembr...		Potri.010G155150 [exp]	2.44	0.9894
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.008G098850 [exp]	7.87	0.9682
AT5G36930			Disease resistance protein (TI...		Potri.019G001602 [exp]	13.78	0.9666
AT4G13440			Calcium-binding EF-hand family...		Potri.019G026860 [exp]	14.28	0.9519
AT1G51120	AP2_ERF		AP2/B3 transcription factor fa...		Potri.006G186301 [exp]	16.58	0.9747
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.019G004400 [exp]	17.20	0.9769
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Potri.009G108766 [exp]	19.44	0.9714
AT3G28150		AXY4L, TBL22	ALTERED XYLOGLUCAN 4-LIKE, TRI...		Potri.011G144100 [exp]	19.89	0.9757
AT1G03670			ankyrin repeat family protein ...		Potri.018G077633 [exp]	21.42	0.9692

Compare expression of checked genes

Potri.016G012150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.