Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29730 66 / 2e-12 Leucine-rich repeat transmembrane protein kinase (.1) AT5G62710 60 / 2e-10 Leucine-rich repeat protein kinase family protein (.1) AT5G25930 58 / 9e-10 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G51560 57 / 2e-09 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 54 / 3e-08 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G13800 53 / 4e-08 BAK8, ATSERK5 BRI1- ASSOCIATED KINASE 8, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, somatic embryogenesis receptor-like kinase 5 (.1) AT3G56100 53 / 5e-08 IMK3, MRLK meristematic receptor-like kinase (.1) AT2G33060 52 / 8e-08 AtRLP27 receptor like protein 27 (.1) AT1G53440 52 / 8e-08 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 52 / 1e-07 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G155000 [exp] 380 / 2e-136 AT1G29730 67 / 1e-12 Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G092700 [exp] 147 / 1e-40 AT1G53440 503 / 4e-161 Leucine-rich repeat transmembrane protein kinase (.1) Potri.006G014066 [exp] 111 / 3e-28 AT1G53420 272 / 3e-79 Leucine-rich repeat transmembrane protein kinase (.1) Potri.006G014232 [exp] 83 / 2e-18 AT1G53440 504 / 5e-161 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G105000 [exp] 61 / 5e-11 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G009601 [exp] 61 / 6e-11 AT1G07650 599 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.019G009700 [exp] 60 / 2e-10 AT3G14840 894 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.016G012150 [exp] 60 / 2e-10 AT1G53440 574 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385200 [exp] 58 / 1e-09 AT3G14840 1171 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020935 [exp] 66 / 2e-12 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008712 [exp] 64 / 6e-12 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10023323 [exp] 63 / 2e-11 AT5G46330 1055 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10036672 [exp] 61 / 1e-10 AT5G62710 936 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033104 [exp] 61 / 1e-10 AT5G62710 934 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 58 / 9e-10 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004046 [exp] 58 / 1e-09 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020962 [exp] 57 / 1e-09 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10034753 [exp] 57 / 2e-09 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Lus10030903 [exp] 57 / 3e-09 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G012300.3 pacid=42809303 polypeptide=Potri.016G012300.3.p locus=Potri.016G012300 ID=Potri.016G012300.3.v4.1 annot-version=v4.1 ATGTCGAAACCAATAGGTTCTGAATGGTCAGTAATGCTCATCAGTATACTCTTTCTTCTTAACTATCTTCTTCTCTGGCAACTTGGCTCTGGGGCTTCTT TTGATGATCGCATCGAAGAAGTCGTAGGTAGTGGATCCCTTCCAGATGATGAAGTAAGTGCTCTTCGACTCCTTTCCAAGAATTTGCTGTCCAAAGACAC AATGCAGTTAACTCTCACGTATCCAATTTGTTCTCCGGAGAAGCATGCCGAGATCCGATGTGATTACTGCCACAGCATAAAAAATCAATCGGTTTGTTCG GTCACTATAATAAACTTGCCAAGCAAAAACTTGGATGGATCTATTGACCCATCAATAGATCTCTTTGAAAAATTGGAAGCACTTAATCTTTTCAATAATC AGCTTTCTGGTGAGATTCCTGCGACGCTGGGGAATTTACAGTATCTCAAGATTTTGTATGTTAAAGCTTTGATTCCTTGTTCTATATTTATAAATGATGG CATGCATAGGCTATGTTTATTTCTAAATCATGGTACAATGACTGTGCTAAACATCAGGAACCTTTCAAGCAATTCATTGACCGGTTCTATACCTCCAAAC CTAACAAAGTTGCACAATCTGGAATATCTGTAA
AA sequence Show only first row Show all	>Potri.016G012300.3 pacid=42809303 polypeptide=Potri.016G012300.3.p locus=Potri.016G012300 ID=Potri.016G012300.3.v4.1 annot-version=v4.1 MSKPIGSEWSVMLISILFLLNYLLLWQLGSGASFDDRIEEVVGSGSLPDDEVSALRLLSKNLLSKDTMQLTLTYPICSPEKHAEIRCDYCHSIKNQSVCS VTIINLPSKNLDGSIDPSIDLFEKLEALNLFNNQLSGEIPATLGNLQYLKILYVKALIPCSIFINDGMHRLCLFLNHGTMTVLNIRNLSSNSLTGSIPPN LTKLHNLEYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29730			Leucine-rich repeat transmembr...		Potri.016G012300 [exp]	0	1
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Potri.017G112300 [exp]	2.00	0.9654
AT4G38840			SAUR-like auxin-responsive pro...		Potri.004G165450 [exp]	2.00	0.9595
AT1G29730			Leucine-rich repeat transmembr...		Potri.010G155000 [exp]	3.00	0.9531
AT4G22290			Ubiquitin-specific protease fa...		Potri.004G002000 [exp]	5.29	0.9259
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Potri.001G267700 [exp]	5.47	0.9340
AT4G38840			SAUR-like auxin-responsive pro...		Potri.004G165300 [exp]	10.24	0.9252
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Potri.001G254100 [exp]	12.32	0.9476
AT2G45970		CYP86A8, LCR	LACERATA, "cytochrome P450, fa...		Potri.014G085800 [exp]	13.41	0.9398	Pt-CYP86.6
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Potri.010G241500 [exp]	14.17	0.8956
AT5G47500		PME5	pectin methylesterase 5, Pecti...		Potri.003G076900 [exp]	18.33	0.9252

Compare expression of checked genes

Potri.016G012300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.