Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45480 167 / 5e-43 Protein of unknown function (DUF594) (.1) AT5G45540 157 / 6e-40 Protein of unknown function (DUF594) (.1) AT5G45470 153 / 1e-38 Protein of unknown function (DUF594) (.1) AT5G45460 151 / 3e-38 unknown protein AT5G45530 134 / 2e-32 Protein of unknown function (DUF594) (.1) AT4G19080 108 / 2e-25 Protein of unknown function (DUF594) (.1) AT4G19090 107 / 7e-24 Protein of unknown function (DUF594) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G013750 [exp] 612 / 0 AT5G45540 183 / 7e-49 Protein of unknown function (DUF594) (.1) Potri.010G154932 [exp] 596 / 0 AT5G45480 166 / 4e-45 Protein of unknown function (DUF594) (.1) Potri.010G154866 [exp] 496 / 7e-173 AT5G45530 127 / 2e-32 Protein of unknown function (DUF594) (.1) Potri.006G010900 [exp] 505 / 9e-172 AT5G45540 173 / 1e-45 Protein of unknown function (DUF594) (.1) Potri.006G011100 [exp] 469 / 1e-157 AT5G45480 173 / 1e-45 Protein of unknown function (DUF594) (.1) Potri.006G013500 [exp] 399 / 4e-130 AT5G45480 130 / 3e-31 Protein of unknown function (DUF594) (.1) Potri.006G013400 [exp] 392 / 3e-127 AT5G45480 115 / 2e-26 Protein of unknown function (DUF594) (.1) Potri.006G013600 [exp] 377 / 9e-121 AT5G45460 119 / 8e-28 unknown protein Potri.015G116201 [exp] 365 / 3e-116 AT5G45540 203 / 2e-55 Protein of unknown function (DUF594) (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04578 [poplar] [flax] DUF594 Protein of unknown function, DUF594 PF13968 [poplar] [flax] DUF4220 Domain of unknown function (DUF4220)
Representative CDS sequence Show only first row Show all	>Potri.016G012400.1 pacid=42809756 polypeptide=Potri.016G012400.1.p locus=Potri.016G012400 ID=Potri.016G012400.1.v4.1 annot-version=v4.1 ATGGATATCAACAACTTGTCCAAACGTGCTCAAGAATTGTGGAATGAATGGGAGATTCGCTCACTGATTTTGTTAAGTCTCTTTCTCCAAATCTTGCTCA TCGTCATTGGAAATCGGCGGAAGTACCACACTCGAATCGTACTTGGAGGCCTTGTCTGGATAGCATACTTGTCCGCGGATTGGGTGACGACTTATGCATT GAGTAGTGTTTCCCGTAGCCAAGGAGGTTCGGGAACAAATTGCATCAATCCAACTCCAAACAATATTCCAGCATTTTGGGCACCAATTCTCCTTGTACAC CTTGGTGGCCCTGACACTATTACTGCTTATGCACTGGAAGACAACGAATTGTGGTTACGGCACCTTCTCCAGCTAGCAATTCAAGCTTCTACAACTTCTT ATTCCCTGTTCAAATCATGGGGTAAGGATCCACTCATATATATAGCCATTCCCATCTTTGTTGCTGGAATTACCAAGTATGGAGACAGGGTTTTGGTTCT CTGGCTAGCAAGCTCCAAGAAGTTTAGGGACATCCAAAGTGAAGAAGTGGATACTTTCCAGAGCGAATTTGGCAAGAAATTTCCATCTGTTGGCTTTTTT GACATGTCTGAGGAAGACTTGAATAAAGGTTTAGAATTTAACAACATAATACCTGAGGCTGTGTATCTCCATGAAGCACATTTTTTGTTTCAAATGTTCA AGATATTTTATGCAGATCTCGCGCTTAGCCATTCTAGCCATATGGCAAGCTATCGTATCCTGAGTAGCAAGAAGAAAGCCACAGAAGCCTTCAAAGTGAT AGAAGTCGAGTTGGGATTGATGTACGATGTGCTTTTTACAAAGGTGACAAGTGTTTGTTCAACGCGTACTATTCTTCGCTCCATCAGTTTCCTGTCTTCT GCTTCTGCATTGGTCGCGTTCTCGTTGATGGTCGCGAACAAGTGTGCCTATACAGAAACCGAGGTAATTATATCATACATCTTGCTGGGAGGAGGAGTTG TTCTTGAGATATATGGATTCATAATGCTTCTCTTATCTGAATGGGCTATGTTTCGGCTTAGCTTGCTAAAAAATCCTTGGGCCAATGCTCTCTATAAGGC TGTTCATAAAGCTATCTATTCTGACAACAACAAAAGGTGGGAAAGAGACATGGCACAACACGACTTAACAGATGCTCATATTACCAAGAACGGAGCTTTG TGGAAGATGGTCAAAAATTCGTTGGTATGTAAACCAACACCCAAAGTTTGTTTTCTGAAGTTGATAGGCGAGGACATTCAAAGTTGGGAGGTTATCAGTG ACGAATTAAAAGAATTAATTTGGGAATACCTCAAAGACAAACGTTCGAGATATAGTCATGAAATGCCTCAACCTGATCCTGGCATGAATGATTTGAAGGA GATATTGGCAGAAAGAGGTGATCATGTGCTGAAAAAGATGGGATGCCTTGAAGAATTTCGTTGGGCTGTGGTTGAAATAGACTTTCATGGGAGCCTCCTT TTATGGCACATTGCCACTGATATTTGCTATCATGATGATATTCGCAATAACAAAGTTGATGCAAATAATCAACTTTGCAAAATGAGCAGATCCTTATCTA ATTACATGTTGTATCTTCTAAGTGAACGTCCAAATATGCTGCCTAAAGGGATTGGTCAGGCAAGGTACAAGCAAACCGGCATTCAACTCACCGAATCCTC GTGGTGTTGGAGATCGAAAATAATAACATCTACTCATTGGGGTTCTGAAGAGTTTATGAAGGAAATCAAAAAAAAAGAAGGCGATGTGTCAATGCTACAT GATGCTTGCAAGCTCGCCAAGGAATTACAATCTCTGGAGACGTCAGAAAAGAAGTTGACCAATGAACAAAAGTGGAGGATGATAAGTAAAATATGGGTGG AGATGTTGACTTATGCAGCATCTAATTGTGGATGGAAAGAGCATGCTCAAGCACTTACACGTGGCGGGGAGCTCCTCACTCGTGTGTGCCTTCTCATGGC GCATCTGGGTTTAAGCGAGCAGTGTCTGCCACGTGCAAGCACCAGTTCCAGGGAAGCTCAAAATCCGTAG
AA sequence Show only first row Show all	>Potri.016G012400.1 pacid=42809756 polypeptide=Potri.016G012400.1.p locus=Potri.016G012400 ID=Potri.016G012400.1.v4.1 annot-version=v4.1 MDINNLSKRAQELWNEWEIRSLILLSLFLQILLIVIGNRRKYHTRIVLGGLVWIAYLSADWVTTYALSSVSRSQGGSGTNCINPTPNNIPAFWAPILLVH LGGPDTITAYALEDNELWLRHLLQLAIQASTTSYSLFKSWGKDPLIYIAIPIFVAGITKYGDRVLVLWLASSKKFRDIQSEEVDTFQSEFGKKFPSVGFF DMSEEDLNKGLEFNNIIPEAVYLHEAHFLFQMFKIFYADLALSHSSHMASYRILSSKKKATEAFKVIEVELGLMYDVLFTKVTSVCSTRTILRSISFLSS ASALVAFSLMVANKCAYTETEVIISYILLGGGVVLEIYGFIMLLLSEWAMFRLSLLKNPWANALYKAVHKAIYSDNNKRWERDMAQHDLTDAHITKNGAL WKMVKNSLVCKPTPKVCFLKLIGEDIQSWEVISDELKELIWEYLKDKRSRYSHEMPQPDPGMNDLKEILAERGDHVLKKMGCLEEFRWAVVEIDFHGSLL LWHIATDICYHDDIRNNKVDANNQLCKMSRSLSNYMLYLLSERPNMLPKGIGQARYKQTGIQLTESSWCWRSKIITSTHWGSEEFMKEIKKKEGDVSMLH DACKLAKELQSLETSEKKLTNEQKWRMISKIWVEMLTYAASNCGWKEHAQALTRGGELLTRVCLLMAHLGLSEQCLPRASTSSREAQNP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45480			Protein of unknown function (D...		Potri.016G012400 [exp]	0	1
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.013G120000 [exp]	2.44	0.9712
AT3G17380			TRAF-like family protein (.1)		Potri.008G099600 [exp]	3.16	0.9695
AT3G17380			TRAF-like family protein (.1)		Potri.003G103200 [exp]	5.19	0.9686
AT4G03500			Ankyrin repeat family protein ...		Potri.011G016100 [exp]	6.63	0.9615
AT3G17380			TRAF-like family protein (.1)		Potri.001G130700 [exp]	8.66	0.9578
AT4G37445			unknown protein		Potri.007G051200 [exp]	9.38	0.9505
AT2G27140			HSP20-like chaperones superfam...		Potri.009G153200 [exp]	9.48	0.9516
AT1G04850			ubiquitin-associated (UBA)/TS-...		Potri.002G244500 [exp]	9.94	0.9487
AT4G22370			unknown protein		Potri.016G013200 [exp]	10.00	0.9400
AT4G03500			Ankyrin repeat family protein ...		Potri.019G107000 [exp]	10.39	0.9316

Compare expression of checked genes

Potri.016G012400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.