Plant FIBer expression Database

Potri.016G012450 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G013500
[exp]
55 / 1e-09 AT5G45480 130 / 3e-31 Protein of unknown function (DUF594) (.1)
Potri.006G013400
[exp]
49 / 9e-08 AT5G45480 115 / 2e-26 Protein of unknown function (DUF594) (.1)
Potri.006G013600
[exp]
48 / 3e-07 AT5G45460 119 / 8e-28 unknown protein
Potri.006G013300
[exp]
0 / 1 AT5G45480 106 / 2e-23 Protein of unknown function (DUF594) (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.016G012450.1 pacid=42810131 polypeptide=Potri.016G012450.1.p locus=Potri.016G012450 ID=Potri.016G012450.1.v4.1 annot-version=v4.1
ATGAATATTCCCACCTGGACTTCTATCAACTTAAGCCTTCTTAATTTGGTATATATTCTTTTTGGAAATCAAATCGTAGGTTATCTTTTGATCATCAATG
CCAAGAACTACATTTGTGAACAGCATCCTGAACAAAAGACGAGCTTCATAGAGATATCTATCCTCATACGCTGTTGTTGCATGCAAATTCGGAAGCCATG
TTCTAACAGAAGTGTGGCTGGAAGAATAATTGATTGTCTGTGTAGTGCTCAAAAGTCTGGGAACTTGCTAATTAACCTGAAAGCCCGCATCCTTTCTCCA
TACTTGATTATTCCTGAAATAAAGACGGGAATGGCTACTAGCATGATGGCATTCCTGCTCCGTAACCTGAACAAGACATAA
AA sequence
>Potri.016G012450.1 pacid=42810131 polypeptide=Potri.016G012450.1.p locus=Potri.016G012450 ID=Potri.016G012450.1.v4.1 annot-version=v4.1
MNIPTWTSINLSLLNLVYILFGNQIVGYLLIINAKNYICEQHPEQKTSFIEISILIRCCCMQIRKPCSNRSVAGRIIDCLCSAQKSGNLLINLKARILSP
YLIIPEIKTGMATSMMAFLLRNLNKT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.016G012450
[exp]
0 1
AT2G19480 NFA2, NFA02, NA... NUCLEOSOME/CHROMATIN ASSEMBLY ... Potri.003G036200
[exp]
6.92 0.9177
AT3G18670 Ankyrin repeat family protein ... Potri.002G048832
[exp]
11.61 0.9164
AT4G31980 unknown protein Potri.003G209300
[exp]
15.62 0.9108
AT1G75260 oxidoreductases, acting on NAD... Potri.005G228400
[exp]
19.74 0.9008
AT2G36020 HVA22J HVA22-like protein J (.1) Potri.006G205300
[exp]
21.49 0.8873
AT5G59810 ATSBT5.4 Subtilase family protein (.1) Potri.001G468800
[exp]
23.97 0.9084
AT3G07420 ATNS2, SYNC2_AR... SYNTHETASE C2, asparaginyl-tRN... Potri.002G249700
[exp]
24.45 0.8938 Pt-SYNC2.1
AT3G08510 ATPLC2 phospholipase C 2 (.1.2.3) Potri.001G252300
[exp]
25.65 0.9023
AT4G39810 Polynucleotidyl transferase, r... Potri.007G088500
[exp]
25.69 0.8970
AT2G27140 HSP20-like chaperones superfam... Potri.004G191101
[exp]
27.82 0.9011

Potri.016G012450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.