Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12560 321 / 1e-106 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT4G22390 240 / 2e-75 F-box associated ubiquitination effector family protein (.1) AT3G06240 140 / 5e-37 F-box family protein (.1) AT3G23880 93 / 1e-20 F-box and associated interaction domains-containing protein (.1) AT3G07870 83 / 4e-17 F-box and associated interaction domains-containing protein (.1) AT1G12870 62 / 2e-10 F-box and associated interaction domains-containing protein (.1) AT5G15660 61 / 9e-10 F-box and associated interaction domains-containing protein (.1) AT4G09190 57 / 1e-08 F-box and associated interaction domains-containing protein (.1) AT3G08750 56 / 2e-08 F-box and associated interaction domains-containing protein (.1) AT1G19160 55 / 5e-08 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G154700 [exp] 775 / 0 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013200 [exp] 653 / 0 AT4G12560 289 / 4e-94 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G035500 [exp] 257 / 9e-82 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013000 [exp] 248 / 5e-78 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G010800 [exp] 176 / 5e-51 AT4G12560 159 / 2e-44 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G199800 [exp] 153 / 7e-42 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1) Potri.017G058900 [exp] 146 / 9e-40 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.006G012900 [exp] 139 / 9e-38 AT4G12560 144 / 2e-39 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.016G012700 [exp] 139 / 1e-36 AT4G12560 143 / 3e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039024 [exp] 453 / 3e-158 AT4G12560 333 / 3e-111 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10027322 [exp] 216 / 1e-68 AT4G12560 150 / 6e-44 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10008871 [exp] 124 / 1e-31 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10008870 [exp] 116 / 1e-28 AT3G23880 126 / 9e-33 F-box and associated interaction domains-containing protein (.1) Lus10032458 [exp] 113 / 8e-28 AT4G12560 120 / 1e-30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10023238 [exp] 111 / 6e-27 AT3G23880 126 / 6e-33 F-box and associated interaction domains-containing protein (.1) Lus10031512 [exp] 111 / 7e-27 AT3G16210 100 / 8e-23 F-box family protein (.1) Lus10031480 [exp] 105 / 1e-24 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031478 [exp] 105 / 1e-24 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10000190 [exp] 105 / 1e-24 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.016G012500.1 pacid=42809437 polypeptide=Potri.016G012500.1.p locus=Potri.016G012500 ID=Potri.016G012500.1.v4.1 annot-version=v4.1 ATGTCGAAAATTCCACACGAAATCATAACCGATATTTTCCAACAACTTCCCGTCAAATCTCTCCTCCGGTTCAGATCTCTATCAAAGCCGATTTGCTCCT TAATCGACGGCCCAGATTTCATCAAGTTCCATCTATACCATTCCATCACCGCTAAATCGAATCACAGTGTCATCCTCAAAGAATGGGATCTTTTCACTGT CGATTTTGACACCCTTTCAGACGCTGTGGAGGTTAAGCACCACCCCCTTTACGCCGCTGGGGGCACGGAGGTGATTGGTTCGGTTAATGGGTTGGTGTTT TTGAGACATTCGGAGAGGAATCTTGCGGTGTATAATTTGTCTACGAGGGAGTGGAAGAAATGTTTCGTGGTAGAAATTAAGCCTCCCAGAAGAGATTTGA TTACGGGGTATGTATATTATGGGTTTGGTTATGATTCTGTTGGTGATGATTATAAAGTGGTGAGGATGGCACAATTCGTTAGAGAAGATGAGGGTGGTGG CGGAGGCGGAGGTTATGGCGATGGTGGTGGTGGTTTGGGTTGTGAATATGAAGTTAGGGTTTATAGTTTGAAGAATGACAAGTGGAAGAAAATTGAGGAT TTGCCAATTTGTCTCAAGTTATTAAGCAAACAATTTTTTCATGTTTTGCATAGGAGAGGGTATGGTGTTTTTGCTGGTCATGCTTTGCATTGGATTATCC CTCAAAGGCGTCAACTTGGTATTAGAGATTGTGTTCTTGGGTTTGATATTAGGAACGATAAGTTTTTCGAATTACCGCAACCCAATTATGAGAGCAAAGG TATGAGCTTTCAGGTTGATGTTGGGGTTTTGGAAGGGAATTTGTGTGTAATGTGTAATTATGAGTATGTTTGTGTTGATGTTTGGGTCATGAGGGAGTAT GGCATGAAGGAATCTTGGTGCAAGATGTTTTCTGTTCAAGGGATTAAGTGGATTGGTGCTTTTATGTTTTTGAGACCTTTGATTTATTCTAAGGATGGTG GTAAGGTGTTGTTGGAAGTGAATGATGAAAAGCTTGTGTGGTATGATTGGAAAAATAAGCATGCTAAGGTTGTAAAGATCCGTGGTGGACCGAATTCATA TGGTTCTGAAATGTATGTGGAAAGCCTTGTTAGGATCAATGATGGTGATCGAAACGGCTGGAAGAAGCAGCAAGAGATAGATGAGGAAGAGGAGAAGAGG AAGGCAGATAGGAAGAAGAGGGATAATTTCCTGTCTGTGGGGTTCAAGCTGAAGTTGTAG
AA sequence Show only first row Show all	>Potri.016G012500.1 pacid=42809437 polypeptide=Potri.016G012500.1.p locus=Potri.016G012500 ID=Potri.016G012500.1.v4.1 annot-version=v4.1 MSKIPHEIITDIFQQLPVKSLLRFRSLSKPICSLIDGPDFIKFHLYHSITAKSNHSVILKEWDLFTVDFDTLSDAVEVKHHPLYAAGGTEVIGSVNGLVF LRHSERNLAVYNLSTREWKKCFVVEIKPPRRDLITGYVYYGFGYDSVGDDYKVVRMAQFVREDEGGGGGGGYGDGGGGLGCEYEVRVYSLKNDKWKKIED LPICLKLLSKQFFHVLHRRGYGVFAGHALHWIIPQRRQLGIRDCVLGFDIRNDKFFELPQPNYESKGMSFQVDVGVLEGNLCVMCNYEYVCVDVWVMREY GMKESWCKMFSVQGIKWIGAFMFLRPLIYSKDGGKVLLEVNDEKLVWYDWKNKHAKVVKIRGGPNSYGSEMYVESLVRINDGDRNGWKKQQEIDEEEEKR KADRKKRDNFLSVGFKLKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.016G012500 [exp]	0	1
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.010G154700 [exp]	1.00	0.9440
AT2G35330			RING/U-box superfamily protein...		Potri.001G144200 [exp]	3.16	0.8907
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Potri.002G160600 [exp]	4.47	0.8908
AT1G18290			unknown protein		Potri.012G045600 [exp]	6.78	0.9025
AT5G16730			Plant protein of unknown funct...		Potri.019G047600 [exp]	10.67	0.8927
AT3G27440		UKL5	uridine kinase-like 5 (.1)		Potri.017G071200 [exp]	10.95	0.8819
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Potri.002G092700 [exp]	17.57	0.8102	ACCASE.2
AT3G13275			unknown protein		Potri.001G469401 [exp]	19.49	0.8808
AT3G51580			unknown protein		Potri.006G108400 [exp]	21.02	0.8758
AT2G46710			Rho GTPase activating protein ...		Potri.002G176800 [exp]	21.35	0.8884

Compare expression of checked genes

Potri.016G012500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.