Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19110 452 / 2e-158 Protein kinase superfamily protein (.1.2.3) AT5G45430 444 / 8e-155 Protein kinase superfamily protein (.1.2) AT4G13020 360 / 5e-123 MHK Protein kinase superfamily protein (.1.2.3.4.5) AT1G73690 214 / 3e-66 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1) AT1G66750 212 / 9e-66 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1) AT1G18040 209 / 2e-64 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT5G63370 204 / 3e-61 CDKG;1 Protein kinase superfamily protein (.1.2.3.4) AT3G48750 198 / 3e-61 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT4G11330 200 / 5e-61 ATMPK5 MAP kinase 5 (.1) AT1G59580 192 / 5e-58 ATMPK2 mitogen-activated protein kinase homolog 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G154400 [exp] 755 / 0 AT4G19110 451 / 4e-158 Protein kinase superfamily protein (.1.2.3) Potri.003G190200 [exp] 546 / 0 AT4G19110 508 / 5e-179 Protein kinase superfamily protein (.1.2.3) Potri.003G101600 [exp] 499 / 9e-177 AT4G19110 689 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.002G247500 [exp] 374 / 5e-128 AT4G13020 629 / 0.0 Protein kinase superfamily protein (.1.2.3.4.5) Potri.001G035400 [exp] 354 / 4e-123 AT4G19110 306 / 9e-104 Protein kinase superfamily protein (.1.2.3) Potri.004G133500 [exp] 203 / 4e-63 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.012G052100 [exp] 197 / 3e-59 AT1G18040 562 / 0.0 cyclin-dependent kinase D1;3 (.1) Potri.014G079100 [exp] 193 / 6e-58 AT1G73690 573 / 0.0 cyclin-dependent kinase D1;1 (.1) Potri.009G066100 [exp] 192 / 7e-58 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008303 [exp] 461 / 3e-161 AT4G19110 616 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033278 [exp] 459 / 2e-160 AT4G19110 620 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10038123 [exp] 447 / 2e-155 AT4G19110 555 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10003155 [exp] 360 / 1e-122 AT4G13020 629 / 0.0 Protein kinase superfamily protein (.1.2.3.4.5) Lus10017371 [exp] 205 / 1e-62 AT1G18040 564 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10040530 [exp] 206 / 2e-62 AT1G18040 593 / 0.0 cyclin-dependent kinase D1;3 (.1) Lus10025986 [exp] 194 / 1e-58 AT2G18170 617 / 0.0 MAP kinase 7 (.1) Lus10010637 [exp] 192 / 8e-58 AT1G59580 657 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Lus10007921 [exp] 192 / 1e-57 AT4G01370 689 / 0.0 MAP kinase 4 (.1) Lus10014283 [exp] 191 / 1e-57 AT2G18170 611 / 0.0 MAP kinase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.016G012801.1 pacid=42810063 polypeptide=Potri.016G012801.1.p locus=Potri.016G012801 ID=Potri.016G012801.1.v4.1 annot-version=v4.1 ATGGAAAGGTACAGGTTAATTAACGAACTTGGGGAGGGAACCTATGGCAGTGTCCTGAAGGCGATTAATAACGAGTCTGGTGAAGTTGTTGCCATTAAGC AGATGAAGAGAAGATATGATTCATGGGAAGAATGTTTGAGTTTGAGAGAATTGAAGTCCTTGCGGAATTTGCATCATCCAAACATTGTGATGCTTAAGGA GCTTGTCCGCCAAAACAGCATCCTGTATTTCGTTTTCGAGTACATGGAACAGAACCTTTATCAGGTAATTTCTGACAGGAAAATCCTGTTCTCAGAAGTT GAAGTTCGGAACTTGTGTCGTCAGGTGTTTCAGGGTCTTGCTTACATGCATCAGAAAGGGTATTTTCACCGCGATCTTAAGCCGGAGAACCTGTTGGTTA CTGAAGACGTTGTTAAGATTGCTGATTTTGGTCTTGCAAGAGAAATCGATTCGCAGCCGCCGTATACACAATATGTTAGCACCCGCTGGTATCGCGCTCC TGAAGTGATGCTGCGGTCAGATTGTTACAGTTCTAAGGTTGATATGTGGGCTATGGGCGCTATCATGGCAGAGTTATTCACTCTCCGTCCACTGTTTCCT GGTACCAATGAGGGAAACCAGATGTACAGAATATGCAGTGTCTTCGGCACTCCAACTATAGATTCATGGGCTGATGGAATTCATCTTGCGAGGACTCTTA ACTACCAATTTCCGAACTTTGATGGTGTCCAGCTTTCGGCATTGATCCCATCTGCCAGTGAGGAAGCAATCGACCTTATTTCAATGCTTTGTTCTTGGAA TCCTTGCAATAGGCCTACTGCTGAGGAGGCCTTAAAACATCCTTTCTTCAGGAATGACCATTACATTCCGCCTTGTCTTCACTTCACAGCCGCTGCTAAG AGAGAAACTCATTCTGATGGATCAATAGAAGAATTAGAGCAGAAACGCGACATGGGATATTGCGGGGCTCTATATGATTCAAGTCTCAATCACAACTTTC CTTCCTCCAACAAGTTAGACACCGGTTCGAGTACAGTTGCAAGTTCTATAGGGTTAACCAGGATGTTTCCCTTTCTAGCGAACAGTTAG
AA sequence Show only first row Show all	>Potri.016G012801.1 pacid=42810063 polypeptide=Potri.016G012801.1.p locus=Potri.016G012801 ID=Potri.016G012801.1.v4.1 annot-version=v4.1 MERYRLINELGEGTYGSVLKAINNESGEVVAIKQMKRRYDSWEECLSLRELKSLRNLHHPNIVMLKELVRQNSILYFVFEYMEQNLYQVISDRKILFSEV EVRNLCRQVFQGLAYMHQKGYFHRDLKPENLLVTEDVVKIADFGLAREIDSQPPYTQYVSTRWYRAPEVMLRSDCYSSKVDMWAMGAIMAELFTLRPLFP GTNEGNQMYRICSVFGTPTIDSWADGIHLARTLNYQFPNFDGVQLSALIPSASEEAIDLISMLCSWNPCNRPTAEEALKHPFFRNDHYIPPCLHFTAAAK RETHSDGSIEELEQKRDMGYCGALYDSSLNHNFPSSNKLDTGSSTVASSIGLTRMFPFLANS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19110			Protein kinase superfamily pro...		Potri.016G012801 [exp]	0	1
AT5G28780			PIF1 helicase (.1)		Potri.012G073100 [exp]	35.00	0.4586
AT2G17880			Chaperone DnaJ-domain superfam...		Potri.002G020800 [exp]	40.62	0.5105
AT5G26594		ARR24	response regulator 24 (.1)		Potri.002G253100 [exp]	119.02	0.4128
AT5G26330			Cupredoxin superfamily protein...		Potri.006G259000 [exp]	133.44	0.4299
AT5G12000			Protein kinase protein with ad...		Potri.006G225300 [exp]	161.54	0.4288
					Potri.009G102600 [exp]	170.12	0.4011

Compare expression of checked genes

Potri.016G012801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.