Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12570 853 / 0 UPL5 ubiquitin protein ligase 5 (.1) AT1G55860 178 / 3e-45 UPL1 ubiquitin-protein ligase 1 (.1.2) AT1G70320 175 / 2e-44 UPL2 ubiquitin-protein ligase 2 (.1) AT3G17205 130 / 1e-30 UPL6 ubiquitin protein ligase 6 (.1.2.3) AT3G53090 125 / 5e-29 UPL7 ubiquitin-protein ligase 7 (.1.2) AT5G02880 80 / 5e-15 UPL4 ubiquitin-protein ligase 4 (.1) AT4G38600 72 / 1e-12 UPL3, KAK UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) AT1G53930 63 / 3e-11 Ubiquitin-like superfamily protein (.1) AT1G55060 64 / 4e-11 UBQ12 ubiquitin 12 (.1) AT4G05050 62 / 5e-11 UBQ11 ubiquitin 11 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G011701 [exp] 1553 / 0 AT4G12570 842 / 0.0 ubiquitin protein ligase 5 (.1) Potri.016G059800 [exp] 1327 / 0 AT4G12570 733 / 0.0 ubiquitin protein ligase 5 (.1) Potri.002G110500 [exp] 194 / 2e-50 AT1G55860 1125 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.011G094100 [exp] 174 / 6e-44 AT1G55860 4187 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.001G368600 [exp] 174 / 6e-44 AT1G55860 4297 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.016G096500 [exp] 136 / 2e-32 AT3G53090 1447 / 0.0 ubiquitin-protein ligase 7 (.1.2) Potri.010G150000 [exp] 115 / 8e-26 AT3G17205 1506 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.008G101300 [exp] 109 / 3e-24 AT3G17205 1432 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.004G174700 [exp] 76 / 2e-13 AT4G38600 2241 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010493 [exp] 1159 / 0 AT4G12570 830 / 0.0 ubiquitin protein ligase 5 (.1) Lus10003792 [exp] 482 / 8e-164 AT4G12570 409 / 3e-136 ubiquitin protein ligase 5 (.1) Lus10027324 [exp] 452 / 2e-151 AT4G12570 373 / 1e-121 ubiquitin protein ligase 5 (.1) Lus10032830 [exp] 195 / 9e-51 AT1G55860 1189 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10002605 [exp] 191 / 3e-49 AT1G55860 1128 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10032589 [exp] 171 / 5e-43 AT1G55860 4402 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10035589 [exp] 122 / 5e-28 AT3G53090 1385 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10039026 [exp] 110 / 9e-28 AT4G12570 97 / 7e-24 ubiquitin protein ligase 5 (.1) Lus10008636 [exp] 92 / 1e-18 AT3G53090 1270 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10027323 [exp] 83 / 2e-17 AT4G12570 72 / 5e-14 ubiquitin protein ligase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00240 [poplar] [flax] ubiquitin Ubiquitin family CL0552 [poplar] [flax] Hect PF00632 [poplar] [flax] HECT HECT-domain (ubiquitin-transferase)
Representative CDS sequence Show only first row Show all	>Potri.016G012900.5 pacid=42808897 polypeptide=Potri.016G012900.5.p locus=Potri.016G012900 ID=Potri.016G012900.5.v4.1 annot-version=v4.1 ATGTCACCTCCCCAATTTCCCGCCGTTGATTCCCTCCCTCAACAGCGCTCCTCCACCGTTGATCACCGCGGCTCCTCCAAACGCAAACTAGACGATGTCG ATGACCACGACGCCGTTTTCTCTGACTTAATCTCCGTCAGGATGCGTAAAGACGACACCGAATCATCCACCGGCCATAACCTGCAACAACCTCCCTCCAT CTCCTCCACCAATCAGCTCCCCACACGTGTCTCCGACGCCTCCGCCTCCGCCTCATCATCAACCACCGATTTTCCCTCCACTCCCTCCCCTCTCCGTCGG TCTCAATCGAGGCTCCAATTCTTCATCAGAATGATCTCCGACGGCACTCACATTGTGATCACCGCGAATTTGACTGATTCCGTCAAATCACTCCATGAAC GGATTCGCGTGATGACCGGAATTCCGGTGATCGAGCAACGACTAATCTACGAAGGTAAGCAATTGCAATACGAAAACAAACTCTCCGATTATTCTATCGA GAAGGATTCGATTCTTCATTTAGTTGGCCGAATGCGTAGCACTAGGCATCCCCGTACTTGTCAATTGATCAATGATATGGTTTCCTACATTTGTCGAATT TGTAAGTCTATTTTGCCGTGTGGTTTTAATCCATATGTTTCAAAGCATATAAAAGAGTTGATGAATGAGTTCTTTAGCTTGACACCGAAGGATGATAATG AGGATGCTTTAGGACATTTGAATGTGTTTTTATCGAATAGTGCGCCAGCTGCGTTGGTTACACTCTATGTTTCGAGTGTTAAAGGGAATAAGGAGTGCGC GGAGGGTGCGATTAGGCATTTTTTGAATTCATGTAGGATTTCGTTGCCAAAGAGTTTGCATTTGCAGTGTGTTCCGATTGTGATGGAGTTTTGTAATTTG TTGAGGAAGGTTGGGAGTGATGATCCATTGTATATTGTGTGTAGGAGTTGTCTTGGTTCGTTGTTGGAGAATGGTGGGGGTGCGTGTGGGTGGAGGTATC GAGGAGGGGAGGAGGGGAAGGGAGCTGTTGTTATGCAGGAGATTTTTCCGTTTGTTAGTGAGCTGGGGAGTAAGTTGTTTAAAGATTTGATGGGGAGTGT GGGGCCATCAGTAGCTGTTGTGAAGGATTTTTCAGCGTTTTTGGTACCGTTGCATAGTATGATTTCAGAGCAAGGGGCATGTAGGGGTCCGGTTTCGATG CCGTTGAACAAGAGGGCATTTAATTATCCATTGTATGCGAAGGAGATTGAGCATCTTCATGTTATATTTTTTGATTTGCTGAATATTATGGAGAAATGTC TTGGGAAAATGCAGGATTCTTCACATTTGAAAATGAATGGAGAGGGTGAGTTGAATCATACAGGTTGGTCTCAATATTTGGCTATTTTGAAGGAGTTGAA TAACATTGCTAAACTCTATAAGGGTGCTGAGGAAAAGTTTTGGACAGTTTTGAGACTTAGAAAGGCTTCCTTGTGTGTGCTGATTGTTAGATATGCAAAA AGAACTGAAGATCATCAGTGGCTTCTTCGGAACAAGGATGTGACTGATTTTGAGTCTAGGAGGCATTTGGCTATGATGATGTTCCCTGAGGTGAAAGAAG ATTACGAGGAGCTTCACGAGATGCTCATTGATCGGTCACAATTGTTGGCAGAGTCATTTGAGTACATAGTGCATGCCGACTCAGATGCACTGCATGATGG TCTATTTCTGGAATTTAAAAACGAGGAAGCTACTGGTCCTGGTGTATTGCGGGAGTGGTTTTTCTTGGTTACACAAGCTCTATTTGATCCTCAAATTGCT CTTTTTGTGGCATGCCCAAGTGATCGCAGAAGGTTCTATCCTAATCCTGCATCCAAGGTGGATCCCATGCACCTTGAGTATTTCACATTCTCTGGTCGAG TGATGGCTTTAGCTTTGATGCATAAAGTGCAAGTCGGCATTGTATTTGATCGGGCATTTTTCTTGCAATTGGCCGGGATGCATATTACTTTGGAAGACAT ACGGGATGCAGATCCATGCTTGTATAGCAGTTGCAAACAGATTCTGCAAATGGATCCTGAGTTCATTGATTCAGATGCTTTGAGTCTGACATTCGTTCAA GAAGTTGAGGAACTAGGATCCAGGAAAGTTGTGGAACTTTGCTCTGGTGGGAAGAGTATCGTTGTAAATAGCAAGAATCGGGAGAAATATGTCGATCTTC TCATTCAGCATCGCTTTGTAACATCTATCTCTGAACCAGTATCTAGATTTGCACGTGGTTTTGCTGATATTCTTTCAAACTCTGGGCAACCGAAGCTCTT CTTCCAGAGTTTAGAGCTTGAGGATCTTGATTGGATGCTATATGGAAGTGAAAATGCTATCTGTGTGGAAGATTGGAAGGCACACACTGAGTACAATGGC TACAAGGAAACTGATCCTCAGATATCCTGGTTCTGGAAGATCATTGGGGAAATGTCACCAGATCAGAGAAAGGTTTTGCTCTTCTTTTGGACCTCAGTGA AGTATCTACCTGTTGAGGGTTTCCGCGGTCTGGCCTCGCGACTTTACATTTACAAGTCCACAGAGCCTCACAATCACCTCCCTTCATCTCATACATGCTT TTACCGATTGTGTTTCCCACCTTATCCCTCCATGGCTATTATGCAAGATCGCCTCCGTCTCATCACTCAAGAACATGTGGGATGCAGTTTCGGCACCTGG TGA
AA sequence Show only first row Show all	>Potri.016G012900.5 pacid=42808897 polypeptide=Potri.016G012900.5.p locus=Potri.016G012900 ID=Potri.016G012900.5.v4.1 annot-version=v4.1 MSPPQFPAVDSLPQQRSSTVDHRGSSKRKLDDVDDHDAVFSDLISVRMRKDDTESSTGHNLQQPPSISSTNQLPTRVSDASASASSSTTDFPSTPSPLRR SQSRLQFFIRMISDGTHIVITANLTDSVKSLHERIRVMTGIPVIEQRLIYEGKQLQYENKLSDYSIEKDSILHLVGRMRSTRHPRTCQLINDMVSYICRI CKSILPCGFNPYVSKHIKELMNEFFSLTPKDDNEDALGHLNVFLSNSAPAALVTLYVSSVKGNKECAEGAIRHFLNSCRISLPKSLHLQCVPIVMEFCNL LRKVGSDDPLYIVCRSCLGSLLENGGGACGWRYRGGEEGKGAVVMQEIFPFVSELGSKLFKDLMGSVGPSVAVVKDFSAFLVPLHSMISEQGACRGPVSM PLNKRAFNYPLYAKEIEHLHVIFFDLLNIMEKCLGKMQDSSHLKMNGEGELNHTGWSQYLAILKELNNIAKLYKGAEEKFWTVLRLRKASLCVLIVRYAK RTEDHQWLLRNKDVTDFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLAESFEYIVHADSDALHDGLFLEFKNEEATGPGVLREWFFLVTQALFDPQIA LFVACPSDRRRFYPNPASKVDPMHLEYFTFSGRVMALALMHKVQVGIVFDRAFFLQLAGMHITLEDIRDADPCLYSSCKQILQMDPEFIDSDALSLTFVQ EVEELGSRKVVELCSGGKSIVVNSKNREKYVDLLIQHRFVTSISEPVSRFARGFADILSNSGQPKLFFQSLELEDLDWMLYGSENAICVEDWKAHTEYNG YKETDPQISWFWKIIGEMSPDQRKVLLFFWTSVKYLPVEGFRGLASRLYIYKSTEPHNHLPSSHTCFYRLCFPPYPSMAIMQDRLRLITQEHVGCSFGTW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Potri.016G012900 [exp]	0	1
AT4G27220			NB-ARC domain-containing disea...		Potri.011G124100 [exp]	1.73	0.8641
AT2G35050			Protein kinase superfamily pro...		Potri.003G110000 [exp]	2.00	0.8422
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Potri.013G012100 [exp]	6.63	0.7743
AT5G27240			DNAJ heat shock N-terminal dom...		Potri.005G043200 [exp]	7.07	0.8265
AT1G15890			Disease resistance protein (CC...		Potri.011G124240 [exp]	10.24	0.7849
AT1G15890			Disease resistance protein (CC...		Potri.011G124432 [exp]	11.22	0.7761
AT2G37840			Protein kinase superfamily pro...		Potri.006G092900 [exp]	14.00	0.7875
AT3G57570			ARM repeat superfamily protein...		Potri.006G054100 [exp]	14.86	0.7799
AT1G35660			unknown protein		Potri.019G083100 [exp]	15.23	0.8315
AT1G73460			Protein kinase superfamily pro...		Potri.012G039700 [exp]	16.12	0.7921

Compare expression of checked genes

Potri.016G012900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.