Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12590 464 / 2e-168 Protein of unknown function DUF106, transmembrane (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G011500 [exp] 491 / 6e-179 AT4G12590 456 / 5e-165 Protein of unknown function DUF106, transmembrane (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039028 [exp] 472 / 2e-171 AT4G12590 448 / 7e-162 Protein of unknown function DUF106, transmembrane (.1) Lus10027326 [exp] 469 / 3e-170 AT4G12590 448 / 4e-162 Protein of unknown function DUF106, transmembrane (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0376 [poplar] [flax] Oxa1 PF01956 [poplar] [flax] EMC3_TMCO1 Integral membrane protein EMC3/TMCO1-like
Representative CDS sequence Show only first row Show all	>Potri.016G013100.1 pacid=42809670 polypeptide=Potri.016G013100.1.p locus=Potri.016G013100 ID=Potri.016G013100.1.v4.1 annot-version=v4.1 ATGGCAGAAGATCTAGTGCTAGACACAGCTATAAGAGATTGGGTGCTGATCCCATTAACAGTAGTGATGATTCTTATTGGGATCCTTCGTTACTTTGTTT CAAAGCTTATGCAATCTCAGCAAACTCCGGATGCTAAAATTGTTAAAGAAGGGCAAGTTGTTGTGAGAGCAAGGAATTTGCGAGCTGGAGCTAACTTTAT ACCTGCTAAGTCGTTTCGAGCTCGAAGGGCTTATTTTAGCAATGAGGAAAATGGATTGTTGCATGTTCCCAAGGGCCAGGGTCAGAATCCACAAGCACAA ATGTTCTCTGACCCAAATATGGCTATGGATATGATGAAGAAAAACCTTTCTATGATTATACCCCAGACTCTTACCTTTGCATGGGTCAACTTTTTCTTCT CTGGATTTGTTGCAGCCAAGATACCATTTCCACTGACTCAGAGATTCAGATCAATGCTGCAAAATGGGATTGATTTGAGCACTGTGGATGTTAGCTATGT TAGCAGTCGATCATGGTATTTCCTTAATTTGTTTGGATTAAGGGGTTTATTTAGTCTCATTCTGGGTGAAGAAAATGCTATGGATGATACCCAGCGGATG ATGCAAATGGGTGGTTTTGGTTTTGATCCAACCAAGAACTTGAGTGCTGAGAAAGATGGCCTTGACATAATTCAGCATGAATGGGCCCTACCAAAATTTG AGCAGCGTGCTGAAGCAGTGTTGAAAAAACTTGTGAGCTGA
AA sequence Show only first row Show all	>Potri.016G013100.1 pacid=42809670 polypeptide=Potri.016G013100.1.p locus=Potri.016G013100 ID=Potri.016G013100.1.v4.1 annot-version=v4.1 MAEDLVLDTAIRDWVLIPLTVVMILIGILRYFVSKLMQSQQTPDAKIVKEGQVVVRARNLRAGANFIPAKSFRARRAYFSNEENGLLHVPKGQGQNPQAQ MFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNLFGLRGLFSLILGEENAMDDTQRM MQMGGFGFDPTKNLSAEKDGLDIIQHEWALPKFEQRAEAVLKKLVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12590			Protein of unknown function DU...		Potri.016G013100 [exp]	0	1
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Potri.001G315800 [exp]	3.16	0.9314
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Potri.017G056000 [exp]	6.92	0.9159
AT3G07950			rhomboid protein-related (.1)		Potri.008G041100 [exp]	12.56	0.9236
AT3G11780			MD-2-related lipid recognition...		Potri.006G201400 [exp]	13.74	0.9080
AT1G60970			SNARE-like superfamily protein...		Potri.003G043200 [exp]	15.19	0.9214
AT4G12590			Protein of unknown function DU...		Potri.006G011500 [exp]	15.29	0.8855
AT1G27390		TOM20-2	translocase outer membrane 20-...		Potri.001G330200 [exp]	16.24	0.9093
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Potri.008G043800 [exp]	20.78	0.8662
AT4G23690			Disease resistance-responsive ...		Potri.001G097001 [exp]	22.24	0.9028
AT5G22130		PNT1	PEANUT 1, mannosyltransferase ...		Potri.001G031500 [exp]	22.27	0.8629	Pt-PNT1.1

Compare expression of checked genes

Potri.016G013100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.