Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22370 114 / 4e-32 unknown protein AT5G41470 90 / 2e-21 Nuclear transport factor 2 (NTF2) family protein (.1) AT1G71480 75 / 2e-16 Nuclear transport factor 2 (NTF2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G100500 [exp] 80 / 1e-17 AT5G41470 213 / 2e-68 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.003G131500 [exp] 80 / 1e-17 AT5G41470 210 / 5e-67 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.019G074800 [exp] 64 / 5e-12 AT1G71480 249 / 2e-84 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.013G100600 [exp] 52 / 5e-08 AT1G71480 199 / 5e-65 Nuclear transport factor 2 (NTF2) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003793 [exp] 122 / 5e-35 AT4G22370 86 / 4e-22 unknown protein Lus10024664 [exp] 69 / 2e-13 AT5G41470 196 / 2e-61 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10041048 [exp] 68 / 2e-13 AT1G71480 238 / 7e-80 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10032294 [exp] 63 / 1e-11 AT5G41470 177 / 1e-54 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10010491 [exp] 42 / 0.0003 AT3G07880 274 / 9e-93 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G013200.3 pacid=42810095 polypeptide=Potri.016G013200.3.p locus=Potri.016G013200 ID=Potri.016G013200.3.v4.1 annot-version=v4.1 ATGGCCATTGTCTCTCACCCCACCTTGTTAAACGGAACTAGACTATTCGTCTCAAATTCACCTCCAAAACTCACCCCACAAGCAAGGAATTCCTACAGTC CCTACTACTACTTCTCTTCAAGGCATAGAGACTTATTGCCACTAGTGCCATCCAATGCTAAGACATCATCAGGATCAGGAGAGGAAGATAACCCAGCTGT AGAAACAGTTCTCAAGCTTTACACATCAATCAAGAACAAAAATATCAGGGAATTGTCTGATATAATTGGTGATGAATGCCGATGTGTTTGCAATTTCTTC TCCTTCTTCCAACCCTTCCAAGGGAAACAGCAAGTGTTGAATTTTTTCAAAATTCTGATCAAATTCTTGGGAAACAATTTTGAATTTGTCGTGCAACCTA CCTTCCATGATGGACTGAATGTTGGCGTAGCTTGGAGACTAAACTGGAGCAAGACACATGTGCCTTTCGGAAAGGGTTTTAGCTTCTACATTCTCCAAGT ATACCAAGGGAGGATCGTCATAAGGAATGTGGAGATGTTCATGGAACCACTTCTTCATATTGAGCCTTTTAGACTGAAAATGATGGGATTCGCCATGAGC ATTGTGGAAAAGATGAGCTCCTGTAAATTGTCCAGAGACAAGGTGAAGAAAGCTGTGCTTGTTATGGTTTTGCTTGCTGTCATCTTGATCTTCTTAATGC CAGGGATGTATTAG
AA sequence Show only first row Show all	>Potri.016G013200.3 pacid=42810095 polypeptide=Potri.016G013200.3.p locus=Potri.016G013200 ID=Potri.016G013200.3.v4.1 annot-version=v4.1 MAIVSHPTLLNGTRLFVSNSPPKLTPQARNSYSPYYYFSSRHRDLLPLVPSNAKTSSGSGEEDNPAVETVLKLYTSIKNKNIRELSDIIGDECRCVCNFF SFFQPFQGKQQVLNFFKILIKFLGNNFEFVVQPTFHDGLNVGVAWRLNWSKTHVPFGKGFSFYILQVYQGRIVIRNVEMFMEPLLHIEPFRLKMMGFAMS IVEKMSSCKLSRDKVKKAVLVMVLLAVILIFLMPGMY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22370			unknown protein		Potri.016G013200 [exp]	0	1
AT3G17380			TRAF-like family protein (.1)		Potri.008G099600 [exp]	5.29	0.9502
AT3G05620			Plant invertase/pectin methyle...		Potri.013G013200 [exp]	6.63	0.9401
AT3G17380			TRAF-like family protein (.1)		Potri.003G103200 [exp]	8.48	0.9428
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.002G087500 [exp]	9.00	0.9120
AT5G45480			Protein of unknown function (D...		Potri.016G012400 [exp]	10.00	0.9400
AT5G19730			Pectin lyase-like superfamily ...		Potri.007G015700 [exp]	11.31	0.9085
AT2G01080			Late embryogenesis abundant (L...		Potri.001G163800 [exp]	15.29	0.9326
AT1G70280			NHL domain-containing protein ...		Potri.016G092200 [exp]	16.12	0.9296
AT3G17380			TRAF-like family protein (.1)		Potri.001G130700 [exp]	16.94	0.9379
AT3G50150			Plant protein of unknown funct...		Potri.016G039500 [exp]	17.54	0.9106

Compare expression of checked genes

Potri.016G013200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.