Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21060 1000 / 0 Galactosyltransferase family protein (.1.2) AT5G62620 728 / 0 Galactosyltransferase family protein (.1.2) AT1G74800 718 / 0 Galactosyltransferase family protein (.1) AT1G27120 709 / 0 Galactosyltransferase family protein (.1) AT1G26810 335 / 7e-106 GALT1 galactosyltransferase1 (.1) AT3G06440 309 / 4e-96 Galactosyltransferase family protein (.1.2) AT1G53290 78 / 3e-15 Galactosyltransferase family protein (.1) AT2G26100 71 / 6e-13 Galactosyltransferase family protein (.1) AT3G14960 71 / 6e-13 Galactosyltransferase family protein (.1) AT1G77810 55 / 1e-07 Galactosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G011300 [exp] 1326 / 0 AT4G21060 1005 / 0.0 Galactosyltransferase family protein (.1.2) Potri.012G072400 [exp] 725 / 0 AT5G62620 905 / 0.0 Galactosyltransferase family protein (.1.2) Potri.015G067600 [exp] 724 / 0 AT5G62620 920 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G040400 [exp] 711 / 0 AT5G62620 858 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G168500 [exp] 353 / 1e-112 AT1G26810 857 / 0.0 galactosyltransferase1 (.1) Potri.008G086900 [exp] 338 / 3e-107 AT1G26810 829 / 0.0 galactosyltransferase1 (.1) Potri.010G151600 [exp] 333 / 4e-105 AT3G06440 702 / 0.0 Galactosyltransferase family protein (.1.2) Potri.001G392700 [exp] 79 / 1e-15 AT1G53290 452 / 3e-160 Galactosyltransferase family protein (.1) Potri.011G111700 [exp] 72 / 2e-13 AT1G53290 462 / 2e-164 Galactosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036154 [exp] 1118 / 0 AT4G21060 963 / 0.0 Galactosyltransferase family protein (.1.2) Lus10004256 [exp] 720 / 0 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10042164 [exp] 716 / 0 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10037238 [exp] 707 / 0 AT5G62620 881 / 0.0 Galactosyltransferase family protein (.1.2) Lus10036686 [exp] 640 / 0 AT5G62620 743 / 0.0 Galactosyltransferase family protein (.1.2) Lus10012822 [exp] 348 / 5e-111 AT1G26810 828 / 0.0 galactosyltransferase1 (.1) Lus10030467 [exp] 346 / 2e-110 AT1G26810 780 / 0.0 galactosyltransferase1 (.1) Lus10036756 [exp] 340 / 2e-107 AT1G26810 831 / 0.0 galactosyltransferase1 (.1) Lus10037171 [exp] 336 / 2e-107 AT1G26810 764 / 0.0 galactosyltransferase1 (.1) Lus10032650 [exp] 306 / 1e-94 AT3G06440 659 / 0.0 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00337 [poplar] [flax] Gal-bind_lectin Galactoside-binding lectin CL0110 [poplar] [flax] GT-A PF01762 [poplar] [flax] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.016G013300.1 pacid=42808917 polypeptide=Potri.016G013300.1.p locus=Potri.016G013300 ID=Potri.016G013300.1.v4.1 annot-version=v4.1 ATGAAGAGGTTAAAGAATGAACCTTCTAGTACTAGGAGGTGCAAGCTGTCGCATTTGTTGTTGGTTATAGGAGCATTGTACTTGGTGTTTTTAGCATTCA AGTTTCGACATTTTTTAGAGATTGCAGCAATGGTGAGTGGGGGTGATAGTTATGTTGGATTGGATTCGTTTTCCATGGTAAAAGATGTTGAAGATTCTGA TTTAAGCAAATCGTTTTTTAGTTCGGTTTATAAGGATACGTTTCACCGGAAATTAGAAGATAATCGAAACCAAAACGCACCGATGATGCCCAGTAAGGAA CCTTTGGAAGAGGAGAAAAGAGGGGGGACAAAAACTATAAAACCAATTCAGTATCCTTATGGTCGAATAACAGGAGAATTTATGAGGCGAAGGAATGCAA CTAGGAATTTTTCACCATTTGAGAGAATGGCAGATGAGGCTTGGCTGCTTGGATTAAAGGCATGGGAAGAAGTGGAAAATTATGATGGAAAGGAGATTGG ACAGAGTTCTTTATACGAGGGGAAGATTGAGTCATGTCCTCTGTGGGTATCCATGAGTGGCGAGGAGTTCGCTGGAGGGGAAAAGTTGATGCTTCTTCCA TGTGGTTTAGCAGCAGGGTCATCTATAACCATTGTGGGAACACCCCATCATGCACACCAGGAGTATGTACCCCAGCTTACAAGGTTGAGGAATGGTGATG GCACTGTTATGATTTCACAGTTCATGATTGAGTTGCAGGGGTTGAAGTCAGTGGAGGGGGAGGATCCACCGAAGATTCTACATTTAAATCCTCGATTGAG GGGAGATTGGAGTCGGCATCCTGTCATTGAGCATAATACCTGCTATAGGATGCAATGGGGGACAGCTCAAAGGTGTGATGGTTTGCCATCCAAGAAAGAT GAGGACATGCTGGTTGATGAACATTTGAGATGTGAGAAATGGATGCGGGATGATAATGTAGACTCAAAAGAGTCCAAGACAACATCGTGGTTTAAGAGAT TTATAGGGCGTGAACAGAAACCTGAAGTGACCTGGCCATTTCCTTTTGTGGAGGGAAAATTGTTTGTCCTGACCTTGCGTGCTGGTGTTGATGGATACCA TATTAGTGTTGGGGGCCGGCATGTGACCTCATTTCCATATCGTCCGGGATTTACCCTTGAAGATGCAACGGGATTAGCAATCAAAGGAGACATGGATGTT CATTCAATTTTTGCCACTTCTCTACCCAGATCACATCCAAGCTTCTCTCCTCAAAGAGTATTGGAAATGTCAGAAAAGTGGAAAGCTCATCCTTTACCAA AGAGGCCAATTCAAGTTTTTATTGGGATTCTATCAGCTACAAATCACTTTGCAGAACGCATGGCAGTTAGAAAAACTTGGATGCAATCATCAGCAATCAA GTCATCAAATGTAGTTGCTCGTTTTTTTGTTGCATTGAATCCAAGGAAGGAGGTGAATGCAGTACTAAAAAAAGAGGCAGCATACTTTGGTGATATTGTG ATTTTGCCGTTTATGGATCGATATGAGCTTGTGGTTCTTAAAACTATTGCTATTTGTGAGTTTGGGGTTCAGAATGTTTCTGCTGCGTACATTATGAAAT GTGATGATGATACATTTGTTAGGGTTGACACTGTCTTGAAAGAAATTGACCGTACCTCTCGCTCCAAGTCACTTTATATGGGCAATCTCAATCTATTACA TCGTCCTCTAAGAAATGGCAAATGGGCAGTTACTTTTGAGGAATGGCCTGAAGCAGTATACCCTCCTTACGCTAATGGACCTGGATATGTAATTTCTAGT GATATTGCTAAATTTGTCATCGCTCAACATGGCAAACAAAGCCTCAGGCTCTTCAAGATGGAAGATGTTAGTATGGGAATGTGGGTTGAACAATTCAACA GCTCCACCCCTGTCCAGTACTCCCACAACTGGAAATTCTGTCAATATGGATGCATGGAGAACTATTATACTGCACATTACCAATCCCCAAGGCAGATGAT CTGTCTATGGGACAAGTTGGCGAGAGGTCGGGCTCAATGTTGCAACTTCAGATGA
AA sequence Show only first row Show all	>Potri.016G013300.1 pacid=42808917 polypeptide=Potri.016G013300.1.p locus=Potri.016G013300 ID=Potri.016G013300.1.v4.1 annot-version=v4.1 MKRLKNEPSSTRRCKLSHLLLVIGALYLVFLAFKFRHFLEIAAMVSGGDSYVGLDSFSMVKDVEDSDLSKSFFSSVYKDTFHRKLEDNRNQNAPMMPSKE PLEEEKRGGTKTIKPIQYPYGRITGEFMRRRNATRNFSPFERMADEAWLLGLKAWEEVENYDGKEIGQSSLYEGKIESCPLWVSMSGEEFAGGEKLMLLP CGLAAGSSITIVGTPHHAHQEYVPQLTRLRNGDGTVMISQFMIELQGLKSVEGEDPPKILHLNPRLRGDWSRHPVIEHNTCYRMQWGTAQRCDGLPSKKD EDMLVDEHLRCEKWMRDDNVDSKESKTTSWFKRFIGREQKPEVTWPFPFVEGKLFVLTLRAGVDGYHISVGGRHVTSFPYRPGFTLEDATGLAIKGDMDV HSIFATSLPRSHPSFSPQRVLEMSEKWKAHPLPKRPIQVFIGILSATNHFAERMAVRKTWMQSSAIKSSNVVARFFVALNPRKEVNAVLKKEAAYFGDIV ILPFMDRYELVVLKTIAICEFGVQNVSAAYIMKCDDDTFVRVDTVLKEIDRTSRSKSLYMGNLNLLHRPLRNGKWAVTFEEWPEAVYPPYANGPGYVISS DIAKFVIAQHGKQSLRLFKMEDVSMGMWVEQFNSSTPVQYSHNWKFCQYGCMENYYTAHYQSPRQMICLWDKLARGRAQCCNFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21060			Galactosyltransferase family p...		Potri.016G013300 [exp]	0	1
AT3G14450		CID9	CTC-interacting domain 9 (.1)		Potri.001G377500 [exp]	4.47	0.8625
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Potri.002G143600 [exp]	5.83	0.8714
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.010G154700 [exp]	6.00	0.8679
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Potri.019G084100 [exp]	7.28	0.8813
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Potri.004G111000 [exp]	20.39	0.8627
AT1G12420		ACR8	ACT domain repeat 8 (.1)		Potri.001G115600 [exp]	20.71	0.8435	Pt-ACR7.1
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.016G012500 [exp]	23.49	0.8415
AT5G16300			Vps51/Vps67 family (components...		Potri.008G079700 [exp]	23.49	0.8334
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.019G048800 [exp]	24.24	0.8546
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.014G161600 [exp]	27.92	0.8570

Compare expression of checked genes

Potri.016G013300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.