Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60990 580 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT1G16280 325 / 1e-106 SWA3, AtRH36 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) AT4G16630 266 / 3e-81 DEA(D/H)-box RNA helicase family protein (.1) AT5G65900 238 / 1e-71 DEA(D/H)-box RNA helicase family protein (.1) AT2G33730 236 / 2e-70 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G18600 228 / 9e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G63120 224 / 8e-67 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G71370 220 / 8e-66 DEA(D/H)-box RNA helicase family protein (.1) AT5G05450 219 / 5e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G14610 219 / 1e-64 DEAD box RNA helicase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G249100 [exp] 614 / 0 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.007G068800 [exp] 597 / 0 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.008G084700 [exp] 321 / 4e-105 AT1G16280 616 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Potri.005G241300 [exp] 260 / 3e-79 AT4G16630 829 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.012G045800 [exp] 239 / 9e-72 AT2G33730 994 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G037200 [exp] 232 / 4e-69 AT2G33730 1058 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G158000 [exp] 225 / 2e-67 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1) Potri.019G130900 [exp] 224 / 4e-67 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G257400 [exp] 229 / 3e-66 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031761 [exp] 595 / 0 AT5G60990 679 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10031182 [exp] 591 / 0 AT5G60990 674 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10006326 [exp] 332 / 3e-108 AT1G16280 673 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10029596 [exp] 332 / 3e-108 AT1G16280 674 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10042754 [exp] 263 / 6e-80 AT1G16280 983 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10015187 [exp] 238 / 5e-71 AT2G33730 1083 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030075 [exp] 223 / 1e-66 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027240 [exp] 222 / 6e-66 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018941 [exp] 224 / 4e-65 AT1G77030 1043 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Lus10028644 [exp] 224 / 4e-65 AT1G77030 1057 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.016G013900.1 pacid=42809655 polypeptide=Potri.016G013900.1.p locus=Potri.016G013900 ID=Potri.016G013900.1.v4.1 annot-version=v4.1 ATGGCAGAAGACAAGCAAGAAACAGAGAAAACATTCGCTGATTTAGGTTTATGTAAAGAACTAGTAGAAGCATGTGAAAATCTAGGATGGAAAAAGCCAA CAAAGATACAAGAAGAAGCAATACCTTATGCACTTCAAGGCAAAGACTTGATTGGTGTAGCAGCTACAGGTTCAGGCAAGACTGGAGCTTTTGTGCTTCC AACACTGGAAGCAATTTTGAAAGATTCACAAGAGAGAAAATCTGTGCAACCCTTCTTTGTTTGTGTTCTTTCTCCTACAAGGGAGTTGGCAATTCAGATT GCTGAGCAGTTTGAAGCTTTGGGATCTGGCATTGGTGTGAGATGTGTGGTGCTTGTTGGAGGAGAGGATATGTTGCAGCAATCTATTGTCCTTGCAAAAA AGCGGCCACACGTTATTGTTGGAACACCTGGTCGCCTTGCGGATCATTTGTCAAACACAAAAGGCTTCTCTCTTCATGCATTGAAATATTTAATCTTGGA TGAAGCAGACAGATTACTGAGTATGGATTTTGAGAAATCACTGGATGAAATTTTAAAGGCCATTCCAAGGAATAGAAGAACCTATTTATTTTCTGCCACT ATGACAAATAAGGTGAAGAAACTCCAAAGGGCTTGTTTAAGGAATCCTGTAAAGATCGAAGCAGCATTTAAATATTCCATTGTTGACACACTGGAGCAGG GGTTTTACTTCATGCCAGCTGCGCTCAAGGATTGCTATCTTGTACATGTACTATCATCAAAGAAAGGAGCTACTTCCATGGTTTTCACTCGGACATGCAG AGAAACTGACTTTTTGGCTTTGGTTCTTCGAAAGCTTGGTCTAGGGGCCATCCCCATTAATGGTCAAATGAGCCAGTCAAACAGACTTGGAGCGTTAAAT AAGTTCAAAGCTGGCGAGTTCAATATTCTGATATGCACTGATGTCGCAAGTAGAGGACTCGATATTCTATCTGTGGATGTTGTTGTTAATTATAATATCC CCACAAACGCCAAGGATTATTTTCATCGTGTTGGTCGAACTGCTCGTGCAGGACGATCAGGGCTTGCAATCTCACTTGTAAATCAATTCGATATAGGACC ATTTAAACAGATAGAGAAGCACATTGGAGATGATTTCAAGATACCTAAGTATACGGCAAATGAAGATGAAGTCTTGCTATTGGCAGAGCGTGTTACAGAA GCCAAAAGAATTTCCAGAAAGAGCATCCAAGAGGGTGGAGGCAACAAGAGAACAGACCGACTAGACGACGAAGATGAGGAGGATATAGAGAAGTATTTAG GCATCAAGAACAAGAAGTTGAGGAGAAAATGA
AA sequence Show only first row Show all	>Potri.016G013900.1 pacid=42809655 polypeptide=Potri.016G013900.1.p locus=Potri.016G013900 ID=Potri.016G013900.1.v4.1 annot-version=v4.1 MAEDKQETEKTFADLGLCKELVEACENLGWKKPTKIQEEAIPYALQGKDLIGVAATGSGKTGAFVLPTLEAILKDSQERKSVQPFFVCVLSPTRELAIQI AEQFEALGSGIGVRCVVLVGGEDMLQQSIVLAKKRPHVIVGTPGRLADHLSNTKGFSLHALKYLILDEADRLLSMDFEKSLDEILKAIPRNRRTYLFSAT MTNKVKKLQRACLRNPVKIEAAFKYSIVDTLEQGFYFMPAALKDCYLVHVLSSKKGATSMVFTRTCRETDFLALVLRKLGLGAIPINGQMSQSNRLGALN KFKAGEFNILICTDVASRGLDILSVDVVVNYNIPTNAKDYFHRVGRTARAGRSGLAISLVNQFDIGPFKQIEKHIGDDFKIPKYTANEDEVLLLAERVTE AKRISRKSIQEGGGNKRTDRLDDEDEEDIEKYLGIKNKKLRRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60990			DEA(D/H)-box RNA helicase fami...		Potri.016G013900 [exp]	0	1
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Potri.017G013601 [exp]	15.52	0.8475
AT1G21480			Exostosin family protein (.1.2...		Potri.002G072300 [exp]	28.51	0.8247
AT1G14710			hydroxyproline-rich glycoprote...		Potri.010G102100 [exp]	29.52	0.8132
AT4G22190			unknown protein		Potri.006G282500 [exp]	29.73	0.8244
AT4G22190			unknown protein		Potri.006G270100 [exp]	33.58	0.8227
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Potri.015G123600 [exp]	38.60	0.8121
AT4G19420			Pectinacetylesterase family pr...		Potri.004G234100 [exp]	40.42	0.7901
AT5G57300			S-adenosyl-L-methionine-depend...		Potri.018G088400 [exp]	45.05	0.8183
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Potri.014G072800 [exp]	50.49	0.8066
AT3G21200		PGR7	proton gradient regulation 7 (...		Potri.008G008801 [exp]	67.15	0.7889

Compare expression of checked genes

Potri.016G013900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.