Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22350 699 / 0 Ubiquitin C-terminal hydrolases superfamily protein (.1.2) AT4G22285 697 / 0 Ubiquitin C-terminal hydrolases superfamily protein (.1) AT4G22410 526 / 0 Ubiquitin C-terminal hydrolases superfamily protein (.1) AT5G22030 62 / 1e-09 UBP8 ubiquitin-specific protease 8 (.1.2) AT2G40930 59 / 7e-09 PDE323, ATUBP5, UBP5 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) AT3G14400 59 / 8e-09 UBP25 ubiquitin-specific protease 25 (.1) AT1G32850 55 / 1e-07 UBP11 ubiquitin-specific protease 11 (.1) AT4G10570 54 / 3e-07 UBP9 ubiquitin-specific protease 9 (.1) AT4G10590 54 / 4e-07 UBP10 ubiquitin-specific protease 10 (.1.2) AT5G10790 53 / 5e-07 UBP22 ubiquitin-specific protease 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G010100 [exp] 903 / 0 AT4G22350 734 / 0.0 Ubiquitin C-terminal hydrolases superfamily protein (.1.2) Potri.016G031900 [exp] 65 / 1e-10 AT2G40930 1204 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.006G033800 [exp] 63 / 5e-10 AT2G40930 1231 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.001G214800 [exp] 62 / 5e-10 AT5G22030 1086 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.006G201100 [exp] 61 / 2e-09 AT5G22030 815 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.001G449000 [exp] 57 / 4e-08 AT4G10570 1097 / 0.0 ubiquitin-specific protease 9 (.1) Potri.001G394600 [exp] 56 / 8e-08 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1) Potri.018G017000 [exp] 55 / 1e-07 AT5G10790 615 / 0.0 ubiquitin-specific protease 22 (.1) Potri.011G112800 [exp] 54 / 2e-07 AT3G14400 690 / 0.0 ubiquitin-specific protease 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003795 [exp] 778 / 0 AT4G22285 713 / 0.0 Ubiquitin C-terminal hydrolases superfamily protein (.1) Lus10010490 [exp] 771 / 0 AT4G22350 714 / 0.0 Ubiquitin C-terminal hydrolases superfamily protein (.1.2) Lus10027746 [exp] 333 / 4e-111 AT4G22285 321 / 9e-107 Ubiquitin C-terminal hydrolases superfamily protein (.1) Lus10035547 [exp] 171 / 2e-50 AT4G22285 154 / 9e-45 Ubiquitin C-terminal hydrolases superfamily protein (.1) Lus10027745 [exp] 166 / 7e-48 AT4G22285 150 / 2e-42 Ubiquitin C-terminal hydrolases superfamily protein (.1) Lus10035548 [exp] 94 / 3e-22 AT4G22410 102 / 3e-26 Ubiquitin C-terminal hydrolases superfamily protein (.1) Lus10008452 [exp] 71 / 2e-12 AT5G22030 1028 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10013369 [exp] 70 / 3e-12 AT5G22030 1065 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10027289 [exp] 64 / 3e-10 AT2G40930 1239 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10038994 [exp] 64 / 3e-10 AT2G40930 1188 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF00443 [poplar] [flax] UCH Ubiquitin carboxyl-terminal hydrolase CL0229 [poplar] [flax] RING PF02148 [poplar] [flax] zf-UBP Zn-finger in ubiquitin-hydrolases and other protein
Representative CDS sequence Show only first row Show all	>Potri.016G014000.1 pacid=42809600 polypeptide=Potri.016G014000.1.p locus=Potri.016G014000 ID=Potri.016G014000.1.v4.1 annot-version=v4.1 ATGGGGACTGAAGAAAGTGGCGGTGTTTCAAAGAGGCAGAGATTGGATGAGCAGTCTTCAGCTTCTGGTATTGAAAACCCACTTGTGCCTTACAATGATG TGGATGATGAAGAGGAGGATTTTGAAAGAGGGAGAACGGCTAATGGTGGTGGAAGGGTGGAGGAGAATAGGGGACAAGTTGTTGCAGCAGAGAATGGTGA GGAGGAGGAGGAGGAGGAGGAGGAGGAGGATTTGTATGGAGAAGAGAATAGTTTGGAGAAGAGGAAGAGTCAATTTGAGCCTCGTGAGGATTGCCCGTAT TTAGATACTGTTAATCGACAGGTCTTGGACTTTGATTTTGAGAAATTTTGCTCTGTTTCCCTGTCAAATTTGAATGTGTATGCATGTTTGGTTTGTGGGA AGTATTACCAAGGAAGAGGGAAGAAATCCCATGCTTATACTCATAGTCTTGAGGCAGGACACCATGTCTACGTCAATCTTAGGACAGAGAAGGTTTATTG TCTTCCTGATGGATATGAGATTATTGATCCATCACTAGATGATATACGACATGTTCTCAATCCAAGGTTTACTAGGGATCAAGTCAAACAGCTTGACAAA AACAGGCAATGGTCCAGGGCACTTGATGGGTCTGATTACCTTCCTGGAATGGTGGGTCTGAATAACATCAAGGAAACTGATTTTGTAAATGTCACAATTC AGTCGCTAATGAGAGTTACACCCTTAAGGAATTTCTTCCTCATCCCTGAAAACTATCAGCATTGCAAGTCTCCTCTTGTTCAACGCTATGGAGAACTCAC TCGTAAAATATGGCATGCTCGGAACTTTAAAGGACAGGTGAGCCCACATGAGTTTCTCCAGGCTGTAATGAAAGCTAGTAAGAAACGGTTTCGCATTGGT CAACAGTCTGATCCAGTGGAATTCATGGCATGGCTTCTTAATACATTGCACACAAATCTTAGAACTTTAAAGAAAAATAACAGTATCATTTATGAGTGCT TTCAGGGTGAGTTGGAGGTTGTGAAAGAGATTCCTAACAAAGCTATCACTGAGAAGAAAGAAAATGGTAATGACCAGATTGATGGTGGAGCTGGTCATGA TATTTTCACAGAAACGTCTAGAATGCCATTCTTGATGCTTGGACTGGATTTGCCACCACCTCCTCTGTTTAAAGATGTGATGGAGAAAAATATAATACCT CAGGTTCCTCTGTTCAATATACTGAAGAAATTTGATGGTGAGAGTGTGACTGAAGTTGTTCGTCCTCGTGTTGCCCGGATGAAATATCGCGTCATCAGAT TGCCACAGTATTTAATACTACATATGCAGCGGTTTAAAAAGAACAACTTTTTCATCGAGAAGAATCCCACCTTGGTCAACTTTCCTGTGAAGAACTTGGA GTTGAAAGATTTTATTCCTTTGCCAATGCCTAAAGAAAATGAGAGATTGCGCTCGAAGTATGATTTGATTGCCGATATTGTCCATGATGGAAAGCCTAAT GAGGGTTTCTACAGGGTTTTTGTGCAGCGAAAGTCAGAAGAGCTATGGTATGAGATGCAGGATCTGCATGTTTCTGAGACCCTTCCTCAAATGGTTGCTC TCTCTGAGGCATACCTGCAGATATATGAGCAGCAGCAGTAG
AA sequence Show only first row Show all	>Potri.016G014000.1 pacid=42809600 polypeptide=Potri.016G014000.1.p locus=Potri.016G014000 ID=Potri.016G014000.1.v4.1 annot-version=v4.1 MGTEESGGVSKRQRLDEQSSASGIENPLVPYNDVDDEEEDFERGRTANGGGRVEENRGQVVAAENGEEEEEEEEEEDLYGEENSLEKRKSQFEPREDCPY LDTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYVNLRTEKVYCLPDGYEIIDPSLDDIRHVLNPRFTRDQVKQLDK NRQWSRALDGSDYLPGMVGLNNIKETDFVNVTIQSLMRVTPLRNFFLIPENYQHCKSPLVQRYGELTRKIWHARNFKGQVSPHEFLQAVMKASKKRFRIG QQSDPVEFMAWLLNTLHTNLRTLKKNNSIIYECFQGELEVVKEIPNKAITEKKENGNDQIDGGAGHDIFTETSRMPFLMLGLDLPPPPLFKDVMEKNIIP QVPLFNILKKFDGESVTEVVRPRVARMKYRVIRLPQYLILHMQRFKKNNFFIEKNPTLVNFPVKNLELKDFIPLPMPKENERLRSKYDLIADIVHDGKPN EGFYRVFVQRKSEELWYEMQDLHVSETLPQMVALSEAYLQIYEQQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22350			Ubiquitin C-terminal hydrolase...		Potri.016G014000 [exp]	0	1
AT4G10090		ELP6	elongator protein 6 (.1)		Potri.008G046400 [exp]	2.00	0.7281
AT1G19520		NFD5	NUCLEAR FUSION DEFECTIVE 5, pe...		Potri.005G228200 [exp]	3.87	0.6941
AT2G28480			RNA-binding CRS1 / YhbY (CRM) ...		Potri.007G129600 [exp]	10.95	0.6484
AT5G47680		AtTRM, TRM10	tRNA modification 10, unknown ...		Potri.006G004900 [exp]	14.89	0.7074
AT5G60960		PNM1	PPR protein localized to the n...		Potri.017G133400 [exp]	18.84	0.6763
AT4G01560		MEE49	maternal effect embryo arrest ...		Potri.014G108400 [exp]	21.00	0.6608
AT3G02490			Pentatricopeptide repeat (PPR)...		Potri.017G108100 [exp]	26.53	0.6448
AT3G11460			Pentatricopeptide repeat (PPR)...		Potri.006G211400 [exp]	29.15	0.6429
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Potri.008G043000 [exp]	29.94	0.6511
AT1G27650	C3HZnF	ATU2AF35A	U2 snRNP auxiliary factor smal...		Potri.005G258000 [exp]	36.98	0.6124

Compare expression of checked genes

Potri.016G014000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.