Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21760 364 / 9e-122 HYR1 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) AT1G07250 358 / 2e-119 UGT71C4 UDP-glucosyl transferase 71C4 (.1) AT3G21790 352 / 8e-117 UDP-Glycosyltransferase superfamily protein (.1) AT3G21780 351 / 1e-116 UGT71B6 UDP-glucosyl transferase 71B6 (.1) AT2G29730 349 / 6e-116 UGT71D1 UDP-glucosyl transferase 71D1 (.1) AT1G07260 344 / 5e-114 UGT71C3 UDP-glucosyl transferase 71C3 (.1) AT2G29740 343 / 2e-113 UGT71C2 UDP-glucosyl transferase 71C2 (.1) AT3G21800 340 / 3e-112 UGT71B8 UDP-glucosyl transferase 71B8 (.1) AT4G15280 336 / 9e-111 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT1G07240 335 / 2e-110 UGT71C5 UDP-glucosyl transferase 71C5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G014401 [exp] 916 / 0 AT3G21760 363 / 3e-121 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G014300 [exp] 902 / 0 AT1G07250 363 / 2e-121 UDP-glucosyl transferase 71C4 (.1) Potri.016G014350 [exp] 891 / 0 AT3G21760 367 / 7e-123 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G010000 [exp] 804 / 0 AT1G07250 375 / 3e-126 UDP-glucosyl transferase 71C4 (.1) Potri.014G026301 [exp] 664 / 0 AT1G07250 356 / 2e-118 UDP-glucosyl transferase 71C4 (.1) Potri.016G014500 [exp] 518 / 0 AT1G07250 394 / 3e-133 UDP-glucosyl transferase 71C4 (.1) Potri.016G015700 [exp] 503 / 2e-176 AT3G21760 354 / 6e-118 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G015800 [exp] 495 / 2e-173 AT1G07250 395 / 3e-134 UDP-glucosyl transferase 71C4 (.1) Potri.009G044600 [exp] 411 / 2e-140 AT2G29730 488 / 2e-170 UDP-glucosyl transferase 71D1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039037 [exp] 398 / 6e-135 AT1G07250 378 / 8e-127 UDP-glucosyl transferase 71C4 (.1) Lus10026795 [exp] 368 / 2e-123 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10036087 [exp] 367 / 7e-123 AT3G21790 455 / 3e-157 UDP-Glycosyltransferase superfamily protein (.1) Lus10036086 [exp] 353 / 2e-117 AT3G21760 431 / 2e-147 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10026793 [exp] 349 / 1e-115 AT3G21780 407 / 4e-138 UDP-glucosyl transferase 71B6 (.1) Lus10036088 [exp] 344 / 1e-113 AT3G21760 377 / 3e-126 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10010476 [exp] 342 / 9e-113 AT1G07250 342 / 7e-113 UDP-glucosyl transferase 71C4 (.1) Lus10003805 [exp] 334 / 1e-109 AT1G07250 332 / 5e-109 UDP-glucosyl transferase 71C4 (.1) Lus10039301 [exp] 259 / 4e-81 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10027334 [exp] 248 / 6e-80 AT1G07260 240 / 2e-77 UDP-glucosyl transferase 71C3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.016G014100.1 pacid=42808954 polypeptide=Potri.016G014100.1.p locus=Potri.016G014100 ID=Potri.016G014100.1.v4.1 annot-version=v4.1 ATGAAGAAAACACAGCTAGTCTTTGTCCCTGCACCTGGATTTGGCCACCTTGTATCAGCTGTTCAGTTAGCAAAGATGGTTCTTGAGAGAAACGACAGTT TCTTGATAACCATGCTTGCCATCAACAATCCATTTTACGGTGGCATAAGCAAGAACACCGAATCGCTTGCTTCAATTCATACAGAAATCAGGTTCGTCGA AATTCCTGATACCATACCTACACCTCCTCCAGAAGCTTTAGCTGTAAGCCCTGCAAGTGCTTTTACTTCTTACATCAATGATCACAAAACCCTTGTGAAA GATACTATTGTTAACCTAGTCATGGCCCACAACCCTGCACCAATTGCTAGTGTTGTTGTTGATATGTTTTGCACTGTATTTATTGATGTTGCAAAAGAAC TTGGTGTCCCTTCTCATGTTTTTTTCACTTCTGATGCTGCCTTTCTTGCCATGACGCTTTACCTTTCAGATAGAGAAGACAAGGGTGAGCCTAAGTTTAG CCCTACTGACCCTGACTATATCATCCCCTGTTATTCAAATCCCGTGCCTTACCGTGTTATGCCGGTATTGCACACCGATGTGGAATATGAGGCTTTGGCA AACCATGGAAGAGAGTTTAAGGACTCCAACGGTATCATTGTTAATACATTTTCAGAAGCTGAGTCCCATGCAGTTAGTGCTCTTTTGGCTAGAGATGATA TACCACCTATTTTCAATGTTGGGCCATTGATTGATCACAAGGGAAAGAGTCTGTCAGGATCTGATGCCGTCAAGCGTGACGAGATCTTGAAATGGCTTGA TGATCAACCTGAAAAATCAGTGGTGTTCTTGTGCTTCGGGAGTGGAGGTGGCTTTGATGAAGCTCAGTTGAAAGAAATTGCAATCGGGCTCGAGAGGAGT GGACATAGGTTCTTATGGTCCGTTCGGTTGAAACCCTCCAGGGGGAAGCTGCAAGCTAGTTTTTTTGACAACTATGGAGAGATCTTGCCACAGGGATTCT TGGAAAGAACTAAAAATATTGGGATGCTATGTGGATGGGCACCACAAGTAGAAATCTTGGCACATAAAGCAGTAGGCGCTTTCGTATCACACTGTGGATG GAACTCAACTTTGGAGGCCTTGTGGTATGCTGTGCCTATTATAACTTGGCCGTTATATGCTGAGCAACACATGAATGCATTTCAGCTGGTGAAAGACTTG GGATTAGCAGTGGAATTGACGTTGGATTTTAGGAGAGATTGTCCTACAGATTTTGTGAAGGCGGAGGTGATAACAAAAGCTGTGAAAACCGTGATGGAAC ATGGTGGTGAACTTAGGAACAAGGCCAAAGAAACCAGTGAAATGGCGAAGAAAGCTGTGATGGAGGGTGGATCTTCGTATGTTGCTTTTGGAAACTTGAT TGATCAATGGTTAGGATGCAAACCTTGA
AA sequence Show only first row Show all	>Potri.016G014100.1 pacid=42808954 polypeptide=Potri.016G014100.1.p locus=Potri.016G014100 ID=Potri.016G014100.1.v4.1 annot-version=v4.1 MKKTQLVFVPAPGFGHLVSAVQLAKMVLERNDSFLITMLAINNPFYGGISKNTESLASIHTEIRFVEIPDTIPTPPPEALAVSPASAFTSYINDHKTLVK DTIVNLVMAHNPAPIASVVVDMFCTVFIDVAKELGVPSHVFFTSDAAFLAMTLYLSDREDKGEPKFSPTDPDYIIPCYSNPVPYRVMPVLHTDVEYEALA NHGREFKDSNGIIVNTFSEAESHAVSALLARDDIPPIFNVGPLIDHKGKSLSGSDAVKRDEILKWLDDQPEKSVVFLCFGSGGGFDEAQLKEIAIGLERS GHRFLWSVRLKPSRGKLQASFFDNYGEILPQGFLERTKNIGMLCGWAPQVEILAHKAVGAFVSHCGWNSTLEALWYAVPIITWPLYAEQHMNAFQLVKDL GLAVELTLDFRRDCPTDFVKAEVITKAVKTVMEHGGELRNKAKETSEMAKKAVMEGGSSYVAFGNLIDQWLGCKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.016G014100 [exp]	0	1
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Potri.016G014300 [exp]	1.41	0.9483
AT2G31305		INH3	inhibitor-3 (.1)		Potri.005G067400 [exp]	2.44	0.9465
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Potri.004G164000 [exp]	10.95	0.9296
AT3G02150	TCP	TFPD, PTF1, TCP...	TEOSINTE BRANCHED1, CYCLOIDEA ...		Potri.004G116100 [exp]	12.00	0.9143
AT1G14780			MAC/Perforin domain-containing...		Potri.008G136401 [exp]	13.41	0.9226
AT1G49620		ICN6, ICK5, KRP...	KIP-RELATED PROTEIN 7, Cyclin-...		Potri.009G103600 [exp]	13.41	0.9316	Pt-ICK5.1,7
AT1G75100		JAC1	J-domain protein required for ...		Potri.014G042600 [exp]	13.85	0.9268
AT5G06280			unknown protein		Potri.016G072500 [exp]	15.87	0.9079
					Potri.013G031800 [exp]	16.12	0.9168
AT3G16350	MYB		Homeodomain-like superfamily p...		Potri.003G049100 [exp]	16.70	0.9095

Compare expression of checked genes

Potri.016G014100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.