Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51970 299 / 1e-99 ATASAT1, ASAT1, ATSAT1 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) AT5G55340 251 / 4e-81 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55350 249 / 5e-80 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55360 243 / 7e-78 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55380 238 / 7e-76 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT1G34520 231 / 3e-73 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55370 227 / 1e-71 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT1G34500 220 / 5e-69 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT1G34490 211 / 2e-65 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55330 211 / 3e-65 MBOAT (membrane bound O-acyl transferase) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G055100 [exp] 414 / 1e-144 AT3G51970 330 / 8e-112 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.009G054900 [exp] 367 / 5e-126 AT3G51970 280 / 1e-92 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.009G055000 [exp] 366 / 9e-126 AT3G51970 314 / 7e-106 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.001G106800 [exp] 325 / 1e-109 AT3G51970 255 / 1e-82 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.001G260700 [exp] 325 / 1e-109 AT3G51970 268 / 2e-87 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.006G009800 [exp] 323 / 1e-108 AT3G51970 244 / 3e-78 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.016G014700 [exp] 323 / 2e-108 AT5G55340 242 / 1e-77 MBOAT (membrane bound O-acyl transferase) family protein (.1) Potri.008G145700 [exp] 274 / 9e-90 AT5G55340 264 / 1e-86 MBOAT (membrane bound O-acyl transferase) family protein (.1) Potri.006G009600 [exp] 110 / 8e-28 AT5G55360 145 / 3e-41 MBOAT (membrane bound O-acyl transferase) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039576 [exp] 353 / 1e-120 AT3G51970 329 / 7e-112 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Lus10022293 [exp] 184 / 6e-57 AT5G55340 178 / 2e-55 MBOAT (membrane bound O-acyl transferase) family protein (.1) Lus10003655 [exp] 142 / 3e-41 AT5G55380 126 / 5e-36 MBOAT (membrane bound O-acyl transferase) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0517 [poplar] [flax] MBOAT-like PF13813 [poplar] [flax] MBOAT_2 Membrane bound O-acyl transferase family
Representative CDS sequence Show only first row Show all	>Potri.016G014600.1 pacid=42809486 polypeptide=Potri.016G014600.1.p locus=Potri.016G014600 ID=Potri.016G014600.1.v4.1 annot-version=v4.1 ATGGAAGATGGGGAGATGTACAACATGATGAAGGTATGGCTCTCAATCTTTGCATCTCTAACTTACTGCTATATCATGGGAAAGATGATCCCAAGAGGTT TTACAAGACTTCTCTGTGTGCTACCAATTGTTTGTCTATTTCTTGTTCTTCCTCTAGAACTCACCTCTATTCATTTTGGAGGCATGACAGCTTTCTTCGT TGCTTGGCTTGCGAATTTCAAGCTCCTGCTTTTTGCGTTTGGCAAAGGCCCTTTGTGTTTAGACCCAAAAATCTCTTTTGGTCGTTTTGTTTCTGTTGCT TGTTTTCCCATCAAAATCCTACAAATCCCACCTCAAAAACCGAATCTAAATGGCCATAGCCATGAAAACCAAGCTCAAAAATCACTTCTAAATGGCCAAG ATAGGCAAAAATTAATCTCTAGAAAGGGCCCTCATAAATCATTCCTAAATTATGCAACCAAAGGTCTTCTTTTGGCAATGTTGGTGGCTACATATGACTA TAGTGATTATATCCATCCAAAAATCATGTGGCTCTTGTATTGTCTCCACATATATTTTTTTCTTGAAACATTCCTAGCCATGTTGGCATCGGTGGTTCGA ACCCTTTCAGGGCTTGAGCTAGAGCCACAATTCAATGACCCTTATCTCTCGACTTCACTTCAAGACTTTTGGGGGAGAAGATGGAACCTCATGGTAACAA GCATCCTACGCCCGATTGCGTACGATCCCATCCTCTACACGTGTAAGAACTTCATTGGTCGCAGGTGGGCCCAGGGCATAGCAATTTTGGGTACCTTTCT AGTGTCTGCGCTCATGCATGAGCTCATTTTCTACTACCTAGGACGCGGGAAGCCCACGTGGGAGATCACTTGGTTCTTTTTGCTACATGGAGTGTGTTTA CCGGTCGAGATTGTTTTGAAAAGGGCTGTTAACGGCAGGTGGCAGTTTCCCAGGCCGATGCAAACTATATTGACCATTGGATTTGTGATAGCTACCGGCT TTTGGCTGTTTTTTCCACCATTTCTTGCGTGTAAAGCAGGTGTCAGGGCAATTGAGGAGTACGCGGCTGTACGCGAGTATTTGAAGGAAGCTGGTCATGC ATATTTTCCTTGGATTTTTCAACAAATCTAA
AA sequence Show only first row Show all	>Potri.016G014600.1 pacid=42809486 polypeptide=Potri.016G014600.1.p locus=Potri.016G014600 ID=Potri.016G014600.1.v4.1 annot-version=v4.1 MEDGEMYNMMKVWLSIFASLTYCYIMGKMIPRGFTRLLCVLPIVCLFLVLPLELTSIHFGGMTAFFVAWLANFKLLLFAFGKGPLCLDPKISFGRFVSVA CFPIKILQIPPQKPNLNGHSHENQAQKSLLNGQDRQKLISRKGPHKSFLNYATKGLLLAMLVATYDYSDYIHPKIMWLLYCLHIYFFLETFLAMLASVVR TLSGLELEPQFNDPYLSTSLQDFWGRRWNLMVTSILRPIAYDPILYTCKNFIGRRWAQGIAILGTFLVSALMHELIFYYLGRGKPTWEITWFFLLHGVCL PVEIVLKRAVNGRWQFPRPMQTILTIGFVIATGFWLFFPPFLACKAGVRAIEEYAAVREYLKEAGHAYFPWIFQQI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Potri.016G014600 [exp]	0	1
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Potri.016G095500 [exp]	2.00	0.9535
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Potri.003G145300 [exp]	3.00	0.9628	WNK8.3
					Potri.004G013800 [exp]	4.24	0.9499
AT3G52105			unknown protein		Potri.009G061800 [exp]	9.53	0.9408
AT5G19610		GNL2	GNOM-like 2 (.1)		Potri.018G075300 [exp]	9.74	0.9363
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Potri.007G124300 [exp]	12.00	0.9513
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Potri.003G131925 [exp]	14.49	0.9314
AT1G27461			unknown protein		Potri.002G117700 [exp]	20.00	0.9303
AT3G19720		DRP5B, ARC5	Dynamin related protein 5B, AC...		Potri.018G027001 [exp]	21.42	0.8948
AT3G56740			Ubiquitin-associated (UBA) pro...		Potri.016G035800 [exp]	24.24	0.8757

Compare expression of checked genes

Potri.016G014600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.