Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55340 243 / 1e-77 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55380 236 / 4e-75 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT3G51970 234 / 3e-74 ATASAT1, ASAT1, ATSAT1 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) AT5G55350 231 / 4e-73 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55360 216 / 3e-67 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT1G34500 216 / 5e-67 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55370 214 / 2e-66 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT5G55330 209 / 1e-64 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT1G34520 205 / 4e-63 MBOAT (membrane bound O-acyl transferase) family protein (.1) AT1G34490 199 / 9e-61 MBOAT (membrane bound O-acyl transferase) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G009800 [exp] 528 / 0 AT3G51970 244 / 3e-78 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.001G106800 [exp] 342 / 2e-116 AT3G51970 255 / 1e-82 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.009G055100 [exp] 313 / 8e-105 AT3G51970 330 / 8e-112 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.016G014600 [exp] 311 / 5e-104 AT3G51970 299 / 1e-99 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.009G055000 [exp] 306 / 2e-102 AT3G51970 314 / 7e-106 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.001G260700 [exp] 286 / 3e-94 AT3G51970 268 / 2e-87 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.009G054900 [exp] 270 / 1e-87 AT3G51970 280 / 1e-92 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Potri.008G145700 [exp] 239 / 3e-76 AT5G55340 264 / 1e-86 MBOAT (membrane bound O-acyl transferase) family protein (.1) Potri.006G009600 [exp] 93 / 2e-21 AT5G55360 145 / 3e-41 MBOAT (membrane bound O-acyl transferase) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039576 [exp] 284 / 2e-93 AT3G51970 329 / 7e-112 ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1, acyl-CoA sterol acyl transferase 1 (.1) Lus10022293 [exp] 170 / 2e-51 AT5G55340 178 / 2e-55 MBOAT (membrane bound O-acyl transferase) family protein (.1) Lus10003655 [exp] 148 / 2e-43 AT5G55380 126 / 5e-36 MBOAT (membrane bound O-acyl transferase) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0517 [poplar] [flax] MBOAT-like PF13813 [poplar] [flax] MBOAT_2 Membrane bound O-acyl transferase family
Representative CDS sequence Show only first row Show all	>Potri.016G014700.1 pacid=42809669 polypeptide=Potri.016G014700.1.p locus=Potri.016G014700 ID=Potri.016G014700.1.v4.1 annot-version=v4.1 ATGGGAGGTGAATTGGGCAACTTTCTCTTGGTATGGGTATCAGCTGTGGCATTACTTTGCTACTGTCACAAGATAGGTCAGTTAACCCACAAAGGCACAA CCAGGCTTCTTGCAATCTTGCCAGTCGTATGCATCTTTCTTGTCATGCCTCTCAGCATCCTTAGTCTGAGTCTTAGAGCTATTACTTCTTTCTTCCTTTG TTGGCTTGCCAACTTCAAGCTCCTTCTCTTTGTCTTCGATCAAGGCCCTCTATCATCCAACCCGCCCCTCTCCTTGCCACATTTCGTTGCCTTTGCTTGC TTTCCTATCAAGATTCAACAAGACCCTGCACCAACAGTATTACCTCATGATCAAGAACTTGTAAATGTTGATGATAATCAAGATCTTGAGAAGCTCGTGA GTGTTGAAAACAAAGACACCCCATCTCAAAAAATCGCCCCAAAAGGCCTTAAATCTCATCTAAACTACGCCTTGAAGTTTTTCCTACTAGTCATATTTGG TTACATCTATGCCAAGGAAGACTATTTCCATCCAAAATTTATATTGTTCCTCTACGTTATCCACATTTATATTGCTCTAGAATTAATCTTGGCCATGTTT GGAGCCCTAGCTCGAGCCTGTCTCGGTGTAGAACTCGAGCCACAATTTGACGAGCCGTACCTCGCCAGCTCTTTGCAAGACTTCTGGGGTAAGAGATGGA ACCTAATGGTCACTAGCATCCTGCATCCAACTGTATACAGTCCAATCCGGTCAACTTTTAGCCGTTGGATAGCAAAAAAGTGGGCTTCATTACCAGCTGT GATTGGCACATTTTTAGTCTCTGGTCTCATGCACGAGCTGATTTTCTACCACATTGGACGCCAAAAGCCAAAGGGGGAGGTCACATGCTTCTTTCTCTTG CATGGTTTTTGCTTGGCTATTGAAATAGGTATCAAGAGAGAAATAAAGGGTACACGGGGGTTGCCTAGAGTAGTGGCAGCACCGCTTGTGGTGGGGTTTG TGGTGGTTACTGCCATGTGGTTGTTCATGCCCACCGTGGTTCGTTGCAAGATTGATGCTGAGGCACGGATGCAGACTATTGCTTTCATTAATTTTGTGGA AGGTGTTTATATCTACTTGAAAGATGTTTTCATAGATCATAAATTTTAG
AA sequence Show only first row Show all	>Potri.016G014700.1 pacid=42809669 polypeptide=Potri.016G014700.1.p locus=Potri.016G014700 ID=Potri.016G014700.1.v4.1 annot-version=v4.1 MGGELGNFLLVWVSAVALLCYCHKIGQLTHKGTTRLLAILPVVCIFLVMPLSILSLSLRAITSFFLCWLANFKLLLFVFDQGPLSSNPPLSLPHFVAFAC FPIKIQQDPAPTVLPHDQELVNVDDNQDLEKLVSVENKDTPSQKIAPKGLKSHLNYALKFFLLVIFGYIYAKEDYFHPKFILFLYVIHIYIALELILAMF GALARACLGVELEPQFDEPYLASSLQDFWGKRWNLMVTSILHPTVYSPIRSTFSRWIAKKWASLPAVIGTFLVSGLMHELIFYHIGRQKPKGEVTCFFLL HGFCLAIEIGIKREIKGTRGLPRVVAAPLVVGFVVVTAMWLFMPTVVRCKIDAEARMQTIAFINFVEGVYIYLKDVFIDHKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55340			MBOAT (membrane bound O-acyl t...		Potri.016G014700 [exp]	0	1
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Potri.017G013400 [exp]	2.23	0.7997
AT4G24250		ATMLO13, MLO13	MILDEW RESISTANCE LOCUS O 13, ...		Potri.003G151750 [exp]	7.74	0.7412
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Potri.001G146100 [exp]	14.49	0.6860	Pt-TOM2.2
AT3G11310			unknown protein		Potri.001G182200 [exp]	22.80	0.7499
AT1G47580			Pentatricopeptide repeat (PPR)...		Potri.002G130900 [exp]	29.59	0.7420
AT1G48600		AtPMEAMT	phosphoethanolamine N-methyltr...		Potri.012G047301 [exp]	44.49	0.6206
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.006G011400 [exp]	45.05	0.5887
					Potri.002G214475 [exp]	45.29	0.7177
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Potri.013G108900 [exp]	63.91	0.6238
					Potri.014G094600 [exp]	67.74	0.6033

Compare expression of checked genes

Potri.016G014700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.