Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12060 159 / 7e-49 ATBAG5 BCL-2-associated athanogene 5 (.1) AT2G46240 44 / 6e-05 ATBAG6, BAG6 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G167500 [exp] 84 / 1e-18 AT1G12060 88 / 1e-19 BCL-2-associated athanogene 5 (.1) Potri.002G166300 [exp] 54 / 1e-08 AT2G46240 140 / 2e-33 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) Potri.017G091100 [exp] 44 / 5e-05 AT3G29310 141 / 2e-36 calmodulin-binding protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010486 [exp] 169 / 5e-52 AT1G12060 201 / 6e-65 BCL-2-associated athanogene 5 (.1) Lus10003798 [exp] 169 / 6e-49 AT1G12050 667 / 0.0 fumarylacetoacetase, putative (.1) Lus10012648 [exp] 57 / 2e-09 AT2G46240 157 / 1e-38 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) Lus10010133 [exp] 56 / 7e-09 AT2G46240 67 / 5e-12 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) Lus10038064 [exp] 43 / 0.0001 AT3G29310 139 / 7e-36 calmodulin-binding protein-related (.1) Lus10026469 [exp] 42 / 0.0003 AT3G29310 140 / 3e-36 calmodulin-binding protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02179 [poplar] [flax] BAG BAG domain
Representative CDS sequence Show only first row Show all	>Potri.016G014900.1 pacid=42809764 polypeptide=Potri.016G014900.1.p locus=Potri.016G014900 ID=Potri.016G014900.1.v4.1 annot-version=v4.1 ATGAACCCATCCAGCAATTTCAGCTACTTCGCTTCCTCCACCGCAACAGTCACTTACTCTTTCCATAATGACCATACTACCCCTACAAAAACCATTGAAA TCCCCATCAAGCCCTCCTCCCCCAAATCCACCACCCAATCAAGCACTGCCACTTCTGCTGCCACCAAGATCCAATCTTGCTACAGGACACATATGATCCG AACCCTTTACAAGAAAATCTCAGCTGTTAGTTCTGAAGCTGATCAGTTACAAAACCAAATCCAACGCCAGGAAACAGTGGATGCAATAAGAAGTAGCGAG AAAGAAAAGCTGGGGATGAATGAGGCCTTGATGGGCTTGCTTCTGAGGCTCGATTCAGTACCGGGGGTTGATCCAACGGTGAGAGAAGCAAGAAGGAAAG TCAGCCGTAGGATTGTGGGGTTGCAGGAAATATTGGACTCAATATGTGAAGCAAAAGTTGGTGCTGATGGTGGTGACTATTTTGGGTGGCAGTGGGACCC TTATGGTGGATGGGATATGGTGTTGGAGGAGATGGAGGAGGAGATTTGTATGGAGAGAGGTGGTGAAGAAATGGAGAAGTTTTGTGCTCAATATCTTGGG TTTAGATGCTTGCAGAGGTTTTTGAAAGAACCATGA
AA sequence Show only first row Show all	>Potri.016G014900.1 pacid=42809764 polypeptide=Potri.016G014900.1.p locus=Potri.016G014900 ID=Potri.016G014900.1.v4.1 annot-version=v4.1 MNPSSNFSYFASSTATVTYSFHNDHTTPTKTIEIPIKPSSPKSTTQSSTATSAATKIQSCYRTHMIRTLYKKISAVSSEADQLQNQIQRQETVDAIRSSE KEKLGMNEALMGLLLRLDSVPGVDPTVREARRKVSRRIVGLQEILDSICEAKVGADGGDYFGWQWDPYGGWDMVLEEMEEEICMERGGEEMEKFCAQYLG FRCLQRFLKEP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12060		ATBAG5	BCL-2-associated athanogene 5 ...		Potri.016G014900 [exp]	0	1
AT3G55140			Pectin lyase-like superfamily ...		Potri.008G048600 [exp]	5.19	0.7889
AT1G29380			Carbohydrate-binding X8 domain...		Potri.011G078500 [exp]	16.64	0.7946
AT1G79480			Carbohydrate-binding X8 domain...		Potri.008G082900 [exp]	24.16	0.7925
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Potri.002G133200 [exp]	29.93	0.7601
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Potri.003G114400 [exp]	30.98	0.7856
AT1G71692	MADS	XAL1, AGL12	XAANTAL1, AGAMOUS-like 12 (.1)		Potri.019G076800 [exp]	31.54	0.7721	AGL12.1
AT5G58300			Leucine-rich repeat protein ki...		Potri.016G139200 [exp]	53.29	0.7566
AT1G32583			unknown protein		Potri.015G101000 [exp]	57.16	0.7217
AT5G13780			Acyl-CoA N-acyltransferases (N...		Potri.001G261800 [exp]	59.17	0.6958
AT2G34700			Pollen Ole e 1 allergen and ex...		Potri.004G044700 [exp]	62.83	0.7459

Compare expression of checked genes

Potri.016G014900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.