Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12610 202 / 1e-59 RAP74, ATRAP74 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G009100 [exp] 786 / 0 AT4G12610 289 / 8e-93 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008686 [exp] 540 / 0 AT4G12610 313 / 3e-102 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors (.1.2) Lus10026142 [exp] 503 / 7e-166 AT3G11440 370 / 5e-115 myb domain protein 65 (.1) Lus10017289 [exp] 473 / 1e-162 AT4G12610 270 / 1e-85 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF05793 [poplar] [flax] TFIIF_alpha Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
Representative CDS sequence Show only first row Show all	>Potri.016G015100.2 pacid=42809973 polypeptide=Potri.016G015100.2.p locus=Potri.016G015100 ID=Potri.016G015100.2.v4.1 annot-version=v4.1 ATGTCGTTCGATCTTCTGTTAAAGCCGTCGTGTAGCGGCTGCGGCAGCACCACAGATTTGTACGGAAGCAATTGCAAGCATATGACGCTTTGCTTGAATT GCGGCAAAACAATGGCGGAGAATCGCGGCAAATGCTTCGATTGTGGCACTACTGTCAGTCGCTTGATTCGAGAGTATAATGTTAGGGCGAGTACGAGTAG CGACAAGAATTATTTTATAGGAAGATTCGTGACAGGATTGCCGAGTTTTTCCAAGAAAAAAAATGCGGAAAATAAATGGTCTTTGCACAAAGAAGGAATC CTTGGTCGTCAGATTACTGATGCTTTGAGGGAGAAGTTTAAGAATAAGCCTTGGCTATTGGAGGATGAGACTGGGCAGTCTCAGTATCAGGGTCATCTTG AAGGGTCGCAATCGGCGACTTATTATCTGTTGATGATGACTGGGAAAGAGTTTGTTGCTATTCCTGCTGGTTCATGGTACAACTTTAACAAGGTAGCGCA TTATAAGCAACTTACGTTGGAGGAAGCAGAGGAGAAGATGAAGAATAGGAGGAAGACTGCGGATGGGTATGAAAGGTGGATGATGAAAGCTGCAAATAAT GGAGCTGCTGCATTTGGTGAGGTGGAGAAGGTAGATGATAAGGAGGGTGTTTCAGCTGGCGGGAGAGGTGGGCGTCGGAAAGCAAGTGGTGATGATGATG AGGGAAATGTGTCTGACAGGGGAGAGGAAGATGAAGAGGAGGAGGCAGGAAGGAAGAGTAGACTCGGACTCAATAAACAGGGTGGTGATGATGATGAAGA AGGTCCAAGAGGAGGTGATCTTGATATGGATGATGATGATATTGAGAAGGGTGATGATTGGGAGCATGAAGAAATTTTCACCGATGATGATGAAGCTGTC GCCATTGATCCTGAGGAACGGGAGGATTTGGCCCCAGAAGTTCCTGCTCCTCCCGAAATCAAGCAGGATGAAGATGATGAGGATGAGGAGAATGAGGAGG GAGGACTGAGTAAATCTGGGAAAGAGTTGAAGAAGCTACTAGGGAAAGCAAATGGTCTAAACGAGTCAGATGTAGAAGATGACGATGACGACGAGGATAT GGATGATGATATTTCTCCGGTTCTGGCTCCAAAGCAGAAGGATGTTGTGCCGAAGGAGGAAGCTGCTGACATTAGTCCTGCAAAACCAACACCTTCAGGT TCTGCTAAGGGAACCCCTTCTACCTCCAAGTCTGCCAAGGGGAAAAGAAAATTGAATGGTGAAGATGCAAAATCTTCCAATGGTGCACCTGTGAAGAAGG TGAAGACAGAAAATGAAGTAAAACCTGCCGTGAAAGAAGAAAGCTCGCCTGCTACTAAAGGTACTGCAACTCCTAAAGTAACACCGCCATCATCAAAAAC AGGGTCAACATCAGGTTCTACTGGTCCTGTCACTGAAGAAGAGATCAGGGCTGTTTTGTTGCAAAATGGGCCTGTTACCACACAGGATCTGGTTGCTAGG TTTAAATCACGACTAAGGACTCCTGAGGACAAGAAAGCTTTTGCAGATATTCTGAGGAGAATTTCTAAGATTCAAAAGACCAGTGGATCTAACTATGTTG TGCTGAGGGACAAATGA
AA sequence Show only first row Show all	>Potri.016G015100.2 pacid=42809973 polypeptide=Potri.016G015100.2.p locus=Potri.016G015100 ID=Potri.016G015100.2.v4.1 annot-version=v4.1 MSFDLLLKPSCSGCGSTTDLYGSNCKHMTLCLNCGKTMAENRGKCFDCGTTVSRLIREYNVRASTSSDKNYFIGRFVTGLPSFSKKKNAENKWSLHKEGI LGRQITDALREKFKNKPWLLEDETGQSQYQGHLEGSQSATYYLLMMTGKEFVAIPAGSWYNFNKVAHYKQLTLEEAEEKMKNRRKTADGYERWMMKAANN GAAAFGEVEKVDDKEGVSAGGRGGRRKASGDDDEGNVSDRGEEDEEEEAGRKSRLGLNKQGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDDEAV AIDPEEREDLAPEVPAPPEIKQDEDDEDEENEEGGLSKSGKELKKLLGKANGLNESDVEDDDDDEDMDDDISPVLAPKQKDVVPKEEAADISPAKPTPSG SAKGTPSTSKSAKGKRKLNGEDAKSSNGAPVKKVKTENEVKPAVKEESSPATKGTATPKVTPPSSKTGSTSGSTGPVTEEEIRAVLLQNGPVTTQDLVAR FKSRLRTPEDKKAFADILRRISKIQKTSGSNYVVLRDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Potri.016G015100 [exp]	0	1
AT5G55660			DEK domain-containing chromati...		Potri.001G367400 [exp]	5.83	0.8359
AT5G58340	MYB		myb-like HTH transcriptional r...		Potri.013G154500 [exp]	8.48	0.7680
AT5G02950			Tudor/PWWP/MBT superfamily pro...		Potri.008G044600 [exp]	9.48	0.7956
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Potri.012G131000 [exp]	9.89	0.7524	Pt-PRH75.1
AT3G63500			Protein of unknown function (D...		Potri.001G264100 [exp]	10.09	0.8055
AT2G35540			DNAJ heat shock N-terminal dom...		Potri.003G097800 [exp]	16.12	0.7944
AT5G08450			unknown protein		Potri.004G135800 [exp]	17.74	0.7804
AT2G27980			Acyl-CoA N-acyltransferase wit...		Potri.009G003900 [exp]	22.44	0.7707
AT5G08450			unknown protein		Potri.018G145560 [exp]	23.47	0.7460
AT4G31880			unknown protein		Potri.006G186700 [exp]	24.53	0.7706

Compare expression of checked genes

Potri.016G015100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.