Plant FIBer expression Database

Potri.016G015300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G008900
[exp]
201 / 1e-66 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.016G015300.1 pacid=42809083 polypeptide=Potri.016G015300.1.p locus=Potri.016G015300 ID=Potri.016G015300.1.v4.1 annot-version=v4.1
ATGGGATGTAAAGTGAGCAAGCTCTCAACTTCCGAGCAGAAGCCAGAAGGAGTCCGCTCCTATGGTCGTGAATCACGCTTTGTTGAATTATTGAAGCCAG
AATGCTTGAAAGTGAAGAAGATCCAGAACAAAAGGCATGTGCTCCGAGAAGAGAAGAAGGGTACAACAGTGAGCAAGTTGACTCTACAGGACTGGCTTTT
AACCTCTCCTAGCTTGAAGGCAGAACAATTGAGAGGAGGAGAGCTTTGTGTTCTCAAACATGGGTCCTCCAAAAGGGTACACCCATCTATTTCAACTAAG
GCAAGAGTGAGTTTTTCCACGGGCAGACTATTGGGGCTTGATCAAGTAGATGATAAAGAAGACTATGTCAGTGCCTCTTCAGTAGCGAGTTCAATTAGCA
GAACCCAAAGTGGGAAGTCACAGAAGAGAGTGAGCTTTAAACTTCCTAAAGAGGCTGATATCATCATATTTTACTCTCCACAGAACTCATTGGAGAGTGA
CCAAGATTGCTCTTTGTAA
AA sequence
>Potri.016G015300.1 pacid=42809083 polypeptide=Potri.016G015300.1.p locus=Potri.016G015300 ID=Potri.016G015300.1.v4.1 annot-version=v4.1
MGCKVSKLSTSEQKPEGVRSYGRESRFVELLKPECLKVKKIQNKRHVLREEKKGTTVSKLTLQDWLLTSPSLKAEQLRGGELCVLKHGSSKRVHPSISTK
ARVSFSTGRLLGLDQVDDKEDYVSASSVASSISRTQSGKSQKRVSFKLPKEADIIIFYSPQNSLESDQDCSL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.016G015300
[exp]
0 1
Potri.006G008900
[exp]
1.00 0.9481
AT4G17810 C2H2ZnF ZFP12 C2H2 and C2HC zinc fingers sup... Potri.003G091200
[exp]
2.00 0.8909
AT2G45400 BEN1 NAD(P)-binding Rossmann-fold s... Potri.002G147600
[exp]
4.47 0.8474
AT3G54140 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE T... Potri.001G248600
[exp]
23.74 0.8152
Potri.003G184250
[exp]
26.38 0.8281
AT4G25810 XTH23, XTR6 xyloglucan endotransglucosylas... Potri.006G071200
[exp]
29.49 0.8012 Pt-EXT.6
AT5G45890 SAG12 senescence-associated gene 12 ... Potri.005G089100
[exp]
33.52 0.8667
AT5G14180 MPL1 Myzus persicae-induced lipase ... Potri.014G159700
[exp]
47.74 0.7966
Potri.005G061780
[exp]
47.91 0.8541
AT3G55130 ABCG19, ATWBC19 ATP-binding cassette G19, whit... Potri.012G045100
[exp]
49.43 0.8429

Potri.016G015300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.