Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22110 445 / 8e-161 PAC1 20S proteasome alpha subunit C1 (.1) AT4G15165 330 / 8e-116 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) AT3G14290 164 / 6e-50 PAE2 20S proteasome alpha subunit E2 (.1) AT1G53850 161 / 6e-49 PAE1, ATPAE1 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) AT5G66140 161 / 1e-48 PAD2 proteasome alpha subunit D2 (.1) AT3G51260 160 / 1e-48 PAD1 20S proteasome alpha subunit PAD1 (.1.2) AT1G16470 142 / 1e-41 PAB1 proteasome subunit PAB1 (.1.2) AT1G79210 140 / 5e-41 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT1G47250 134 / 3e-38 PAF2 20S proteasome alpha subunit F2 (.1) AT5G35590 133 / 5e-38 PAA1 proteasome alpha subunit A1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G008800 [exp] 478 / 8e-174 AT3G22110 452 / 1e-163 20S proteasome alpha subunit C1 (.1) Potri.009G133800 [exp] 166 / 1e-50 AT5G66140 409 / 2e-146 proteasome alpha subunit D2 (.1) Potri.004G174200 [exp] 163 / 1e-49 AT3G51260 406 / 2e-145 20S proteasome alpha subunit PAD1 (.1.2) Potri.001G162900 [exp] 163 / 1e-49 AT3G14290 471 / 4e-171 20S proteasome alpha subunit E2 (.1) Potri.003G072500 [exp] 155 / 7e-47 AT3G14290 464 / 1e-168 20S proteasome alpha subunit E2 (.1) Potri.012G123550 [exp] 142 / 1e-41 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.015G122400 [exp] 142 / 1e-41 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.002G033900 [exp] 137 / 3e-39 AT5G42790 449 / 1e-161 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Potri.005G229200 [exp] 137 / 4e-39 AT5G42790 455 / 9e-164 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042145 [exp] 462 / 2e-167 AT3G22110 474 / 3e-172 20S proteasome alpha subunit C1 (.1) Lus10004235 [exp] 352 / 1e-124 AT3G22110 375 / 2e-134 20S proteasome alpha subunit C1 (.1) Lus10041890 [exp] 158 / 2e-47 AT5G66140 442 / 9e-160 proteasome alpha subunit D2 (.1) Lus10028437 [exp] 152 / 2e-45 AT5G66140 417 / 8e-150 proteasome alpha subunit D2 (.1) Lus10037454 [exp] 160 / 3e-45 AT1G53850 464 / 8e-163 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10003936 [exp] 159 / 7e-45 AT1G53850 463 / 9e-162 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10007396 [exp] 139 / 6e-40 AT5G42790 442 / 8e-159 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Lus10024269 [exp] 138 / 2e-39 AT5G42790 440 / 4e-158 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Lus10036210 [exp] 134 / 1e-38 AT1G16470 450 / 3e-163 proteasome subunit PAB1 (.1.2) Lus10017135 [exp] 134 / 3e-38 AT1G16470 454 / 1e-164 proteasome subunit PAB1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [poplar] [flax] NTN PF00227 [poplar] [flax] Proteasome Proteasome subunit CL0052 [poplar] [flax] NTN PF10584 [poplar] [flax] Proteasome_A_N Proteasome subunit A N-terminal signature
Representative CDS sequence Show only first row Show all	>Potri.016G015400.3 pacid=42810281 polypeptide=Potri.016G015400.3.p locus=Potri.016G015400 ID=Potri.016G015400.3.v4.1 annot-version=v4.1 ATGTCTCGGAGATATGATAGCCGCACAACAATCTTCTCCCCTGAAGGACGTCTGTACCAAGTTGAGTATGCTATGGAAGCCATTGGAAATGCTGGGTCTG CAATAGGAATATTATCCAAAGATGGGGTTGTCTTGGTTGGTGAAAAGAAGGTTACATCCAAGCTATTGCAAACGTCAACTTCCACTGAGAAGATGTACAA GATTGATGATCATGTGGCTGTTGCAGTGGCTGGAATTATGTCTGATGCCAACATCCTAATCAACACTGCAAGGATCCAAGCACAACGCTACACCTTTGCA TACCAAGAGCCAATGCCTGTAGAGCAGTTAGTTCAATCCCTTTGTGACACCAAGCAAGGGTACACACAGTTTGGTGGTCTTCGGCCCTTTGGTGTCTCGT TTCTGTTTGCAGGATGGGACAAAAATTATGGTTTCCAACTTTACATGAGCGATCCTAGTGGAAATTATGCTGGCTGGAAAGCTGCAGCAATTGGTGCAAA CAACCAGGCTGCACAATCCATGTTAAAGCAGGATTACAGGGATGAAATCACAAGGGAAGAAGCTGTCCAGCTTGCTTTGAAGGTGCTCAGCAAAACTATG GATAGTACAAGTCTTACTTCAGAGAAGCTTGAACTGGCTGAGGTCTTCCTTTCTCCTTCTGGGAATGTCAAATACCAAATTTGCCCACCCAATGCTCTAA GCAAGCTGTTGGTGAAGTTTGGAGTTACCCAACCAGCTGCTGAGACTTCCTGA
AA sequence Show only first row Show all	>Potri.016G015400.3 pacid=42810281 polypeptide=Potri.016G015400.3.p locus=Potri.016G015400 ID=Potri.016G015400.3.v4.1 annot-version=v4.1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVAVAVAGIMSDANILINTARIQAQRYTFA YQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYAGWKAAAIGANNQAAQSMLKQDYRDEITREEAVQLALKVLSKTM DSTSLTSEKLELAEVFLSPSGNVKYQICPPNALSKLLVKFGVTQPAAETS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22110		PAC1	20S proteasome alpha subunit C...		Potri.016G015400 [exp]	0	1
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Potri.002G034100 [exp]	1.41	0.9523	APFI.1
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Potri.005G229000 [exp]	2.00	0.9292	APFI.2
AT3G18190			TCP-1/cpn60 chaperonin family ...		Potri.012G051300 [exp]	8.66	0.9246
AT5G45620			Proteasome component (PCI) dom...		Potri.001G135200 [exp]	8.94	0.9114
AT4G37450		ATAGP18, AGP18	arabinogalactan protein 18 (....		Potri.007G051600 [exp]	9.27	0.8829
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Potri.015G122400 [exp]	9.74	0.9162
AT2G28105			unknown protein		Potri.004G215300 [exp]	10.81	0.8979
AT3G08580		AAC1	ADP/ATP carrier 1 (.1.2)		Potri.001G267800 [exp]	11.66	0.9156	Pt-ANT1.1
AT1G80690			PPPDE putative thiol peptidase...		Potri.003G180400 [exp]	13.03	0.9151
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.019G092500 [exp]	15.62	0.9191	RAB11.11

Compare expression of checked genes

Potri.016G015400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.