Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21760 354 / 7e-118 HYR1 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) AT1G07250 352 / 6e-117 UGT71C4 UDP-glucosyl transferase 71C4 (.1) AT2G29730 345 / 2e-114 UGT71D1 UDP-glucosyl transferase 71D1 (.1) AT1G07240 335 / 1e-110 UGT71C5 UDP-glucosyl transferase 71C5 (.1) AT3G21750 330 / 8e-109 UGT71B1 UDP-glucosyl transferase 71B1 (.1) AT4G15280 330 / 1e-108 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT1G07260 330 / 2e-108 UGT71C3 UDP-glucosyl transferase 71C3 (.1) AT2G29740 329 / 4e-108 UGT71C2 UDP-glucosyl transferase 71C2 (.1) AT3G21780 328 / 1e-107 UGT71B6 UDP-glucosyl transferase 71B6 (.1) AT2G29710 324 / 2e-106 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G015800 [exp] 666 / 0 AT1G07250 395 / 3e-134 UDP-glucosyl transferase 71C4 (.1) Potri.016G014350 [exp] 463 / 2e-160 AT3G21760 367 / 7e-123 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G010000 [exp] 461 / 5e-160 AT1G07250 375 / 3e-126 UDP-glucosyl transferase 71C4 (.1) Potri.016G014300 [exp] 457 / 2e-158 AT1G07250 363 / 2e-121 UDP-glucosyl transferase 71C4 (.1) Potri.016G014100 [exp] 457 / 2e-158 AT3G21760 365 / 4e-122 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G014401 [exp] 455 / 2e-157 AT3G21760 363 / 3e-121 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G014500 [exp] 454 / 3e-157 AT1G07250 394 / 3e-133 UDP-glucosyl transferase 71C4 (.1) Potri.016G016000 [exp] 444 / 3e-153 AT3G21750 456 / 6e-158 UDP-glucosyl transferase 71B1 (.1) Potri.014G026301 [exp] 444 / 9e-153 AT1G07250 356 / 2e-118 UDP-glucosyl transferase 71C4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039037 [exp] 419 / 6e-143 AT1G07250 378 / 8e-127 UDP-glucosyl transferase 71C4 (.1) Lus10026795 [exp] 358 / 2e-119 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10036087 [exp] 354 / 7e-118 AT3G21790 455 / 3e-157 UDP-Glycosyltransferase superfamily protein (.1) Lus10010476 [exp] 346 / 3e-114 AT1G07250 342 / 7e-113 UDP-glucosyl transferase 71C4 (.1) Lus10003805 [exp] 339 / 8e-112 AT1G07250 332 / 5e-109 UDP-glucosyl transferase 71C4 (.1) Lus10026793 [exp] 337 / 8e-111 AT3G21780 407 / 4e-138 UDP-glucosyl transferase 71B6 (.1) Lus10036088 [exp] 333 / 4e-109 AT3G21760 377 / 3e-126 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10036086 [exp] 327 / 6e-107 AT3G21760 431 / 2e-147 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10027334 [exp] 272 / 2e-89 AT1G07260 240 / 2e-77 UDP-glucosyl transferase 71C3 (.1) Lus10039301 [exp] 249 / 4e-77 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.016G015700.1 pacid=42810130 polypeptide=Potri.016G015700.1.p locus=Potri.016G015700 ID=Potri.016G015700.1.v4.1 annot-version=v4.1 ATGAAGAAGGCACAGCTAGTTCTTGTCCCTTCACCTGGGATTGGCCATCTTGTTCCCGCTATCGAATTTGCCAAGCGCTTACTTGATCAAGATGACAGTT TCCTAGTAACAGTTCTTGTCATCATCAGAGCACCATTTGGTCCTGACACAGATACCTCCAATCAATCAGTGCTCACCACCATCGATACTCGAATACAATA CATCACTCTTCCTACAGTAACCCCACCTGATTTAGATCCTTTGAGGTCCCCTGAAAACTATGTTACCAGTTTCATGGAGGCTCATAAACCCCTTGTAAAA GATGCTGTGGTCAACCATGTCATGTCCAACAAGTCATCAGTACCGGTTGTTGGTTTGGTTGTTGACCTGTTCTGTGCTTCAATGATTGATGTTGCTAATG AACTTGGGATTTCTTCTTATGTTTACTTCGCTTCTAGTGCTGCCTTTCTGGGTCTCTTGCTCTATCTTCCTACTAGGCAAGAACAGGTTGGGATTGAGTT TAAAGAAACTGATCCTGACTTGATTGTTTCCTGTTTTGCCAATCCTGTGCCTGCTAGGGTTTTGCCATCAGCGTTGCTGAACAAGGATGGTGGGTACACC TGCTTTGAAAATCTTGGAAGAAGATTCAGAGAGGCTAAGGGTATCGTAGTCAATTCCTATGTAGAGTTGGAATCCCATGCAGTCAGCTCATTCTTGGGTG GAGGTACACCCCCAGTTTACACAGTGGGGCCGCTGCTCAATGTCAATGGGCACAGTCTGATGGGGTCAAATTCGGATCGACATGGTAAGATCATGGAATG GCTTGACGATCAACCAGAAAAATCAGTGGTTTTCTTGTGCTTTGGAAGTATAGGGCGTTTTAGGGAAGCCCAGGTGAAAGAGATTGCACTTGGGCTGGAA CAAAGTGGCCACAGATTCTTATGGTCCGTCCGTAAGCCACCACCTGAAGGGCATTTTGCATTACCCAGCGATTACAGTAATTTCGAGGAGGTCTTGCCAG ATGGGTTCCTGGAAAGGACCAAAAATATTGGCATGGTCTGTGGATGGGCTCCACAAATGCAAGTCTTAGCTCATAAAGCCATAAAAGGGTTTGTATCACA TTGTGGATGGAACTCGATCTTGGAGAGCTTGTGGCATGGAGTCCCCATTGTGACATGGCCAATGCATGCTGAGCAGCAAATTAATGCGTTTCAAATGGTG GAGGATTTAGGGATAGCTGTAGAGATGACATTAGATTATAGGATGCGTTCTGACAATCTTGTGCTGGCTGATAAGATAGCAAGGTCTGTGAAAAGCGCGA TGGAGGAAGATGGTGAAGTGAGAAATAAGGTCAAAGCAATGAGTGAAGCTAGCAGGAAAGCTGTGATGGAGGGTGGGTCTTCCTTTGCAGCTCTTGGAGA CTTGATCAAGGATATGCTATCTTGA
AA sequence Show only first row Show all	>Potri.016G015700.1 pacid=42810130 polypeptide=Potri.016G015700.1.p locus=Potri.016G015700 ID=Potri.016G015700.1.v4.1 annot-version=v4.1 MKKAQLVLVPSPGIGHLVPAIEFAKRLLDQDDSFLVTVLVIIRAPFGPDTDTSNQSVLTTIDTRIQYITLPTVTPPDLDPLRSPENYVTSFMEAHKPLVK DAVVNHVMSNKSSVPVVGLVVDLFCASMIDVANELGISSYVYFASSAAFLGLLLYLPTRQEQVGIEFKETDPDLIVSCFANPVPARVLPSALLNKDGGYT CFENLGRRFREAKGIVVNSYVELESHAVSSFLGGGTPPVYTVGPLLNVNGHSLMGSNSDRHGKIMEWLDDQPEKSVVFLCFGSIGRFREAQVKEIALGLE QSGHRFLWSVRKPPPEGHFALPSDYSNFEEVLPDGFLERTKNIGMVCGWAPQMQVLAHKAIKGFVSHCGWNSILESLWHGVPIVTWPMHAEQQINAFQMV EDLGIAVEMTLDYRMRSDNLVLADKIARSVKSAMEEDGEVRNKVKAMSEASRKAVMEGGSSFAALGDLIKDMLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.016G015700 [exp]	0	1
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Potri.010G067800 [exp]	1.00	0.8544
					Potri.015G071100 [exp]	3.87	0.8204
AT3G11760			unknown protein		Potri.008G015700 [exp]	4.47	0.8472
AT2G23260		UGT84B1	UDP-glucosyl transferase 84B1 ...		Potri.009G095500 [exp]	4.89	0.8031	ZOG1.18
AT5G24010			Protein kinase superfamily pro...		Potri.004G079700 [exp]	4.89	0.8341
AT1G77920	bZIP		bZIP transcription factor fami...		Potri.005G170500 [exp]	6.48	0.8007	Pt-TGA3.2
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Potri.004G043500 [exp]	7.48	0.8242
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Potri.005G053500 [exp]	7.74	0.8114
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.007G056400 [exp]	9.48	0.8072	Pt-ATHK1.2
AT5G13920			GRF zinc finger / Zinc knuckle...		Potri.009G112676 [exp]	9.53	0.8009

Compare expression of checked genes

Potri.016G015700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.