Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07250 395 / 4e-134 UGT71C4 UDP-glucosyl transferase 71C4 (.1) AT2G29740 390 / 2e-132 UGT71C2 UDP-glucosyl transferase 71C2 (.1) AT3G21760 390 / 4e-132 HYR1 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) AT1G07260 384 / 6e-130 UGT71C3 UDP-glucosyl transferase 71C3 (.1) AT1G07240 380 / 4e-128 UGT71C5 UDP-glucosyl transferase 71C5 (.1) AT2G29750 376 / 1e-126 UGT71C1 UDP-glucosyl transferase 71C1 (.1) AT3G21780 375 / 3e-126 UGT71B6 UDP-glucosyl transferase 71B6 (.1) AT2G29730 374 / 3e-126 UGT71D1 UDP-glucosyl transferase 71D1 (.1) AT4G15280 374 / 4e-126 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT3G21750 370 / 2e-124 UGT71B1 UDP-glucosyl transferase 71B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G015700 [exp] 754 / 0 AT3G21760 354 / 6e-118 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G014500 [exp] 540 / 0 AT1G07250 394 / 3e-133 UDP-glucosyl transferase 71C4 (.1) Potri.006G010000 [exp] 519 / 0 AT1G07250 375 / 3e-126 UDP-glucosyl transferase 71C4 (.1) Potri.016G014401 [exp] 505 / 3e-177 AT3G21760 363 / 3e-121 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G014350 [exp] 499 / 5e-175 AT3G21760 367 / 7e-123 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.009G044600 [exp] 498 / 1e-174 AT2G29730 488 / 2e-170 UDP-glucosyl transferase 71D1 (.1) Potri.016G014300 [exp] 497 / 3e-174 AT1G07250 363 / 2e-121 UDP-glucosyl transferase 71C4 (.1) Potri.016G014100 [exp] 496 / 4e-174 AT3G21760 365 / 4e-122 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.014G026301 [exp] 493 / 2e-172 AT1G07250 356 / 2e-118 UDP-glucosyl transferase 71C4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039037 [exp] 452 / 4e-156 AT1G07250 378 / 8e-127 UDP-glucosyl transferase 71C4 (.1) Lus10026795 [exp] 401 / 1e-136 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10036087 [exp] 391 / 1e-132 AT3G21790 455 / 3e-157 UDP-Glycosyltransferase superfamily protein (.1) Lus10036088 [exp] 390 / 9e-132 AT3G21760 377 / 3e-126 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10036086 [exp] 382 / 1e-128 AT3G21760 431 / 2e-147 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10026793 [exp] 375 / 5e-126 AT3G21780 407 / 4e-138 UDP-glucosyl transferase 71B6 (.1) Lus10003805 [exp] 370 / 6e-124 AT1G07250 332 / 5e-109 UDP-glucosyl transferase 71C4 (.1) Lus10010476 [exp] 369 / 1e-123 AT1G07250 342 / 7e-113 UDP-glucosyl transferase 71C4 (.1) Lus10039302 [exp] 297 / 1e-95 AT3G16520 393 / 2e-133 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10039301 [exp] 290 / 3e-93 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.016G015800.1 pacid=42809774 polypeptide=Potri.016G015800.1.p locus=Potri.016G015800 ID=Potri.016G015800.1.v4.1 annot-version=v4.1 ATGAAGAAAGCACAGCTAGTTCTAGTCCCTTCTCCTGGAATTGGCCACCTTGTATCCACCATCGAGTTTGCCAAACGCTTGCTCGATCAAGATGAAAGTT TCTTAATCACAGTTCTTGTCATCAAAGCTCCGTTTGCTCTTGACGTAGACACCTTCAATCAATCACTCACTACCATCGATACTCGAATATCCTACATCAC TCTTCCTCAAGTAAGCCCACCTGATGATCAAGACCCTTTTAGGTCCCCTGAAAACTATTTTTCTACTTTCCTCGAGAGACATAAGCCTCATGTAAAAGAT GCTATCCTTAACCATGTTATGTCCAAAAAGTCATCAGTACCGGTTGTTGGTTTGGTTGTTGACTTGTTTTGTTCTTCAATGATTGATGTTGCTAAGGAAC TTGGGATTCCTTCTTATGTTTACATCTCTTCTAGTGCAGGCTTTCTTGGTCTCATGCTTCATCTTCCAACAAGGAAGGATCAGGTTGGGATTGAGTTCAA GGAAACTGACCCTGACTTGATTGTTCCCTGTTTTTTCAACCATGTGCCTGCTAGGGTTATGCCATCAGTGTTGTTGAACAAGGCTGGTGGGTACATCTGC TTTGAAAACCATGCGAGAAGATTTAAAGATACTAAAGGTTTTATCGTCAATACATTTACTGAGCTTGAATCCCATGCAGTCAGCTCCTTTTTGGGTGGAG ATACACCCCCAGTATATACAGTGGGGCCACTACTAAATATCATGAAATGGCTTGATGATCAACCAGAAAAATCAGTTGTGTTCTTGTGCTTTGGAAGTAT AGGGCGTTTTAGTGACGCTCAAGTGAAAGAAATTGCACTTGGGCTGGAACAAAGTGGACATAGATTCTTATGTTCCATTCGTAAGCCACCACCGGAAGGA CAATTTGCAATGCCTAGTGATTACATGAGCTTTGAAGAGGTCTTGCCAGACGGGTTCTTAGAAAGAACAAAAAATATTGGCATGGTATGTGGATGGGCTC CCCAAATACAAGTCCTCGCCCACAGATCTGTGGGAGGATTTGTATCACACTGTGGATGGAACTCGATTTTGGAAAGCTTATGGTATGGTGTACCTGCTGT GACATGGCCAATGTATGCCGAGCAACAACTTAATGCATTTCAAATGGTGAATGATTTAGGATTAGCCATAGAAATGACATTAGATTATAGGATGGATTCT AATGAACTTATTGTGGCTGATAAGATAGCCAAGTCTGTAAAATCATTGATGGAGGAAGGGAGCACCGTGAGAAACAAGGTTAAAGCAGTGAGTGAAGCTA GCAGGAAAACTGTGGTGGATGGTGGATCTTCATTTGCTGCATTTGGAGACTTGATTGAAATCATGCTATCTTGA
AA sequence Show only first row Show all	>Potri.016G015800.1 pacid=42809774 polypeptide=Potri.016G015800.1.p locus=Potri.016G015800 ID=Potri.016G015800.1.v4.1 annot-version=v4.1 MKKAQLVLVPSPGIGHLVSTIEFAKRLLDQDESFLITVLVIKAPFALDVDTFNQSLTTIDTRISYITLPQVSPPDDQDPFRSPENYFSTFLERHKPHVKD AILNHVMSKKSSVPVVGLVVDLFCSSMIDVAKELGIPSYVYISSSAGFLGLMLHLPTRKDQVGIEFKETDPDLIVPCFFNHVPARVMPSVLLNKAGGYIC FENHARRFKDTKGFIVNTFTELESHAVSSFLGGDTPPVYTVGPLLNIMKWLDDQPEKSVVFLCFGSIGRFSDAQVKEIALGLEQSGHRFLCSIRKPPPEG QFAMPSDYMSFEEVLPDGFLERTKNIGMVCGWAPQIQVLAHRSVGGFVSHCGWNSILESLWYGVPAVTWPMYAEQQLNAFQMVNDLGLAIEMTLDYRMDS NELIVADKIAKSVKSLMEEGSTVRNKVKAVSEASRKTVVDGGSSFAAFGDLIEIMLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Potri.016G015800 [exp]	0	1
AT5G39160			RmlC-like cupins superfamily p...		Potri.011G163300 [exp]	2.00	0.9958	GER2.30
					Potri.007G117900 [exp]	2.44	0.9965
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Potri.005G239400 [exp]	6.24	0.9951
AT2G38010			Neutral/alkaline non-lysosomal...		Potri.002G013300 [exp]	6.92	0.9887
AT5G39160			RmlC-like cupins superfamily p...		Potri.011G163216 [exp]	7.41	0.9924
AT1G71480			Nuclear transport factor 2 (NT...		Potri.013G100600 [exp]	7.74	0.9926
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Potri.005G163000 [exp]	12.12	0.9785
AT4G14750		IQD19	IQ-domain 19 (.1)		Potri.013G038901 [exp]	12.24	0.9844
AT3G17675			Cupredoxin superfamily protein...		Potri.013G030450 [exp]	13.26	0.9804
					Potri.015G100600 [exp]	13.78	0.9817

Compare expression of checked genes

Potri.016G015800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.