Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21790 432 / 8e-148 UDP-Glycosyltransferase superfamily protein (.1) AT3G21780 417 / 1e-142 UGT71B6 UDP-glucosyl transferase 71B6 (.1) AT3G21800 416 / 7e-142 UGT71B8 UDP-glucosyl transferase 71B8 (.1) AT3G21760 416 / 8e-142 HYR1 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) AT3G21750 416 / 8e-142 UGT71B1 UDP-glucosyl transferase 71B1 (.1) AT4G15280 405 / 1e-137 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT4G15260 367 / 2e-124 UDP-Glycosyltransferase superfamily protein (.1) AT1G07250 359 / 8e-120 UGT71C4 UDP-glucosyl transferase 71C4 (.1) AT2G29740 343 / 2e-113 UGT71C2 UDP-glucosyl transferase 71C2 (.1) AT1G07240 341 / 2e-112 UGT71C5 UDP-glucosyl transferase 71C5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G016300 [exp] 984 / 0 AT3G21790 425 / 4e-145 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G007350 [exp] 811 / 0 AT3G21790 427 / 5e-146 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G007400 [exp] 785 / 0 AT3G21790 380 / 9e-128 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016700 [exp] 754 / 0 AT3G21750 409 / 3e-139 UDP-glucosyl transferase 71B1 (.1) Potri.016G016600 [exp] 722 / 0 AT3G21780 330 / 2e-109 UDP-glucosyl transferase 71B6 (.1) Potri.006G007300 [exp] 703 / 0 AT3G21790 427 / 4e-146 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016200 [exp] 691 / 0 AT3G21750 396 / 9e-135 UDP-glucosyl transferase 71B1 (.1) Potri.016G016800 [exp] 655 / 0 AT3G21780 412 / 5e-140 UDP-glucosyl transferase 71B6 (.1) Potri.016G016400 [exp] 646 / 0 AT3G21790 395 / 2e-133 UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036087 [exp] 444 / 4e-153 AT3G21790 455 / 3e-157 UDP-Glycosyltransferase superfamily protein (.1) Lus10026795 [exp] 443 / 2e-152 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10026793 [exp] 434 / 8e-149 AT3G21780 407 / 4e-138 UDP-glucosyl transferase 71B6 (.1) Lus10036086 [exp] 421 / 8e-144 AT3G21760 431 / 2e-147 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10036088 [exp] 383 / 2e-128 AT3G21760 377 / 3e-126 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10039037 [exp] 363 / 3e-121 AT1G07250 378 / 8e-127 UDP-glucosyl transferase 71C4 (.1) Lus10010476 [exp] 345 / 1e-113 AT1G07250 342 / 7e-113 UDP-glucosyl transferase 71C4 (.1) Lus10003805 [exp] 337 / 7e-111 AT1G07250 332 / 5e-109 UDP-glucosyl transferase 71C4 (.1) Lus10039301 [exp] 290 / 7e-93 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10027334 [exp] 259 / 3e-84 AT1G07260 240 / 2e-77 UDP-glucosyl transferase 71C3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.016G016100.1 pacid=42809897 polypeptide=Potri.016G016100.1.p locus=Potri.016G016100 ID=Potri.016G016100.1.v4.1 annot-version=v4.1 ATGAAGAAAGCAGAGGTGGTGTTAATCCCCCTACCTGCTATGGGTCATATTGTAGCACTAGTAGAGGTAGCTAAGCTTCTTGTTCAACGTGATGATCGCC TATCCACAACTGTCTTCGTAATGCATCCAACTCTTGATCCTAGCACCACCAAATATACTGAAACACTTGCAGTCTCAACTCTCCCTGATCGTATGCGAGT CATTAACTTGCCAAATCTTGAGTCCATAACATCTGCTACCAAAGGTCGTCACAGCTGGCTAACGTGTTTGATAGAAGGCCAAAAATCTCATGTCAAAGAA TATGTATCCAAGATTAGAACTCAGTACGAGTTGAATCCGGATTCTCCTCGACTTGCTGGGTTCATTTTCGATACTTTTGCTACTGGGATGAAAGATGTGC CTAATGAATTTGGAGTTCCATGGTATGTTTTTTCTGCTTCAGGTGCAGCTTTTATTGGCAGCATGATGCATCTTACTGCTCTTCATGATGAGCAGGGAGT TGACCTTACCGAGTTGAAGAACTCAGAGGATGAATTGGAAATTCCGTGTTTGGCGAATCCAATTCCTGCTAAACTTGTGCCTTCCTCGGTGTTCGAGAAA GACTCACTGACTATTTTTCTTGAACATGCTCGGATATTGACTGAGGCTAGGGGTATTTTGATCAATACATTTTTAGAGTTCGAATCCTATGCAATTAACT CTCTGTCAGATGGTAAAACCCCTCCCGTGTACCCGGTTGGTCCCATTGTGAAACATGTAGGAGGTGGCGGTGATCTGCGGTCGGATGAGAGCAACAATTA TAGGGACATCATGGAATGGCTTGATGATCAACCTCCGTCATCGGTTATGTTCTTATGCTTTGGAAGTTGGGGAAGCTTCAAAGAGAAACAAGTGAAAGAG ATTGCAATTGCACTTGAGCATAGCGGGCATCGGTTCTTATGGTCTCTACGCAAACCTTCACAGAACGGTAAAAAGCAATCTCCGAGTGATTATGAAGATT TTCAAGGTATTTTACCTGAAGGTTTCTTAGATCGAACAGCTATGATTGGGAAGGTAATTGGATGGGCTCCACAAGTGGAAATCTTGTCTCATTCAGCCGT CGGAGGATTTGCATCACATTGTGGATGGAATTCTACACTAGAAAGTGTAAGATTTGGTGTTCCAGTTGCCACTTGGCCATTATATGCAGAGCAACAATTT AATGCTTTTCAAATGGTAATTGAGCTAGGATTAGCCGTGGAAATTAAAATGGAATATTGGAAGGATTTTTATGGCGATACTGAAATAATTGTGAGCAGTG ATGATATATTGAAAGCTATAAAGAGTGTTATGGAAGAAGATAGTGAGGTCAGAAAGAAGGTAAAGGAGATGAGTAGAATAAGTGAAAAAACCTTGGTGGA TGGAGGATCTTCATTTTCTTCATTAGGTCGTCTAATTGAAGATATGACGGAAAACATGTCATGA
AA sequence Show only first row Show all	>Potri.016G016100.1 pacid=42809897 polypeptide=Potri.016G016100.1.p locus=Potri.016G016100 ID=Potri.016G016100.1.v4.1 annot-version=v4.1 MKKAEVVLIPLPAMGHIVALVEVAKLLVQRDDRLSTTVFVMHPTLDPSTTKYTETLAVSTLPDRMRVINLPNLESITSATKGRHSWLTCLIEGQKSHVKE YVSKIRTQYELNPDSPRLAGFIFDTFATGMKDVPNEFGVPWYVFSASGAAFIGSMMHLTALHDEQGVDLTELKNSEDELEIPCLANPIPAKLVPSSVFEK DSLTIFLEHARILTEARGILINTFLEFESYAINSLSDGKTPPVYPVGPIVKHVGGGGDLRSDESNNYRDIMEWLDDQPPSSVMFLCFGSWGSFKEKQVKE IAIALEHSGHRFLWSLRKPSQNGKKQSPSDYEDFQGILPEGFLDRTAMIGKVIGWAPQVEILSHSAVGGFASHCGWNSTLESVRFGVPVATWPLYAEQQF NAFQMVIELGLAVEIKMEYWKDFYGDTEIIVSSDDILKAIKSVMEEDSEVRKKVKEMSRISEKTLVDGGSSFSSLGRLIEDMTENMS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21790			UDP-Glycosyltransferase superf...		Potri.016G016100 [exp]	0	1
AT3G21790			UDP-Glycosyltransferase superf...		Potri.016G016300 [exp]	1.00	0.9845
AT1G25340	MYB	ATMYB116	myb domain protein 116 (.1.2)		Potri.015G046200 [exp]	5.29	0.9737
					Potri.006G008132 [exp]	5.91	0.9803
AT2G03550			alpha/beta-Hydrolases superfam...		Potri.009G104100 [exp]	14.38	0.9809
					Potri.001G194100 [exp]	15.29	0.9795
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Potri.019G093700 [exp]	15.87	0.9804	PR3.2
AT1G35210			unknown protein		Potri.005G161700 [exp]	17.66	0.9810
AT4G37290			unknown protein		Potri.016G015600 [exp]	19.89	0.9727
AT5G47990		THAD1, THAD, CY...	THALIAN-DIOL DESATURASE, "cyto...		Potri.009G065000 [exp]	27.12	0.9602	CYP705B5
					Potri.010G075100 [exp]	27.14	0.9778

Compare expression of checked genes

Potri.016G016100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.