Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21790 395 / 2e-133 UDP-Glycosyltransferase superfamily protein (.1) AT3G21780 393 / 1e-132 UGT71B6 UDP-glucosyl transferase 71B6 (.1) AT3G21760 390 / 1e-131 HYR1 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) AT3G21750 387 / 1e-130 UGT71B1 UDP-glucosyl transferase 71B1 (.1) AT4G15280 379 / 4e-127 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT3G21800 372 / 2e-124 UGT71B8 UDP-glucosyl transferase 71B8 (.1) AT1G07250 345 / 4e-114 UGT71C4 UDP-glucosyl transferase 71C4 (.1) AT4G15260 330 / 1e-109 UDP-Glycosyltransferase superfamily protein (.1) AT2G29740 331 / 2e-108 UGT71C2 UDP-glucosyl transferase 71C2 (.1) AT1G07240 327 / 4e-107 UGT71C5 UDP-glucosyl transferase 71C5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G016800 [exp] 871 / 0 AT3G21780 412 / 5e-140 UDP-glucosyl transferase 71B6 (.1) Potri.016G017002 [exp] 739 / 0 AT3G21750 288 / 4e-93 UDP-glucosyl transferase 71B1 (.1) Potri.016G016100 [exp] 642 / 0 AT3G21790 431 / 1e-147 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G007350 [exp] 637 / 0 AT3G21790 427 / 5e-146 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G007400 [exp] 625 / 0 AT3G21790 380 / 9e-128 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016300 [exp] 620 / 0 AT3G21790 425 / 4e-145 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016900 [exp] 611 / 0 AT3G21750 422 / 8e-145 UDP-glucosyl transferase 71B1 (.1) Potri.016G016700 [exp] 597 / 0 AT3G21750 409 / 3e-139 UDP-glucosyl transferase 71B1 (.1) Potri.016G016200 [exp] 578 / 0 AT3G21750 396 / 9e-135 UDP-glucosyl transferase 71B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036087 [exp] 414 / 6e-141 AT3G21790 455 / 3e-157 UDP-Glycosyltransferase superfamily protein (.1) Lus10026793 [exp] 414 / 1e-140 AT3G21780 407 / 4e-138 UDP-glucosyl transferase 71B6 (.1) Lus10026795 [exp] 409 / 3e-139 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10036086 [exp] 377 / 3e-126 AT3G21760 431 / 2e-147 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10036088 [exp] 343 / 6e-113 AT3G21760 377 / 3e-126 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10003805 [exp] 322 / 2e-104 AT1G07250 332 / 5e-109 UDP-glucosyl transferase 71C4 (.1) Lus10010476 [exp] 320 / 5e-104 AT1G07250 342 / 7e-113 UDP-glucosyl transferase 71C4 (.1) Lus10039037 [exp] 307 / 4e-99 AT1G07250 378 / 8e-127 UDP-glucosyl transferase 71C4 (.1) Lus10039301 [exp] 259 / 7e-81 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10027542 [exp] 232 / 2e-70 AT3G16520 431 / 3e-148 UDP-glucosyl transferase 88A1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.016G016400.1 pacid=42809324 polypeptide=Potri.016G016400.1.p locus=Potri.016G016400 ID=Potri.016G016400.1.v4.1 annot-version=v4.1 ATGAAGAAAGCAGAGTTAGTGTTCATCCCTTTACCTGCCATGGGCCATATTATAGCAGCAGTAGAGATTGCCAAGCTTATTGTTGAACGTGATGATCGAA TTTCCACAAGTGTCCTCATAATGAGGCCAACTCTTGACTCCACTACCACCAAATACACTGAGTCACTCAGTCCATCAACTCTACCCAATCGCATGCGAGT CGTTGACTTGCCCTGTCTTGAGCACACCGCTGTCCATAAAACTGGTGCTAGCTGGATGGCTTCTCTGGCTGAAGCTCAGAAAAACCATGTCAAAGAATTT GTTTCGAAGATCAAGGCTCAGTCAGAGTTGAGCCCAAATGACTCTCCTCGACTTGCTGGGTTTGTTTTGGATACTTTTGTTTTGGGAATGAATGATTTGG CTGCAGAATTTGGTGTTCCCTGGTATGTTTTCTCGGCTTCAGGTGCAGCTTTTATCGGCTCGATGTTGTATCTTCAGGCCCTTCATGATGAGCAGAAAGC GGATCTCCCTGAGTACAAAGACTCGGATGCTGAGTTGGAAATTCCAAGCTTGGTGAACAGGCTTCCTGCTAAGCTCCTGCCTTCTTTGGTGTTTGACAGA GAATCTCTCCCTATTTTTCTTGGTGCTGCAAGAAGGTTGAAGCACGCAAGGGGCATTTTGATAAATACATTCAAAGAGTTAGAATCGCATGCAATAAACT CTCTTTCTAAGGGTGAAATCCCTCCTGTATATCCGTTGGGACCAATTGTGAGATGTAAAGGAAACAGTTATGATGTGGGATCAAGTCAAATCAACGACTA CAAGGACATAATGCTATGGCTTGATGATCAGCCTCCATGCTCAGTAGTGTTTTTGTGCTTCAGGAGTTGGGGAAGTTTCAGCGTTGATCAAGTGAAAGAG AATGCATATGCATTGGAGCAATGTGGACATCGATTCTTGTGGTGTCTGCGTGAACGTCCATGCAAGGGTAAGATTGAATCACCAAGTGATTATGTAAATT TTCAAGACATTTTGCCTGAAGGGTTTTTAGATCGATCAGTTAAGATAGGAAAGGTGATTAAATGGGCTCCGCAAGTGGAAATCTTGGGGCACAAAGCTAT TGGAGGATTTGTATCACATTGTGGATGGAATTCTACCTTAGAAAGTACTTTGTCTGGTGTACCAATTGCCACATGGCCATTGTATGGAGAGCAACAATTT AATGCTTTTGAAATCGTGATTGAGTTAGGGTTAGGAGTGGAGATTAAAATAGATTCTGGAATTAATATTATCGAAGGTGCTATCGGAGAAATTGTGAGTT CTGATGATATAAAAAGAGGATTAAAGTTACTGATGGAGAATGGAAGTGAGATTAGAAAAAAGGTGAAAGAGATGAGTCAACTAAGCAGGAAAGCTTTGAT GGAAGATGGGTCTTCATACTCTGCATTGACTCGTCTAATTGAAGATGTGATGGACAGCATAGCATGCCACGATTGCTCTTTGCTGTCATGA
AA sequence Show only first row Show all	>Potri.016G016400.1 pacid=42809324 polypeptide=Potri.016G016400.1.p locus=Potri.016G016400 ID=Potri.016G016400.1.v4.1 annot-version=v4.1 MKKAELVFIPLPAMGHIIAAVEIAKLIVERDDRISTSVLIMRPTLDSTTTKYTESLSPSTLPNRMRVVDLPCLEHTAVHKTGASWMASLAEAQKNHVKEF VSKIKAQSELSPNDSPRLAGFVLDTFVLGMNDLAAEFGVPWYVFSASGAAFIGSMLYLQALHDEQKADLPEYKDSDAELEIPSLVNRLPAKLLPSLVFDR ESLPIFLGAARRLKHARGILINTFKELESHAINSLSKGEIPPVYPLGPIVRCKGNSYDVGSSQINDYKDIMLWLDDQPPCSVVFLCFRSWGSFSVDQVKE NAYALEQCGHRFLWCLRERPCKGKIESPSDYVNFQDILPEGFLDRSVKIGKVIKWAPQVEILGHKAIGGFVSHCGWNSTLESTLSGVPIATWPLYGEQQF NAFEIVIELGLGVEIKIDSGINIIEGAIGEIVSSDDIKRGLKLLMENGSEIRKKVKEMSQLSRKALMEDGSSYSALTRLIEDVMDSIACHDCSLLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21790			UDP-Glycosyltransferase superf...		Potri.016G016400 [exp]	0	1
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G017002 [exp]	2.00	0.9941
AT1G07030			Mitochondrial substrate carrie...		Potri.016G125200 [exp]	2.44	0.9596
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Potri.017G142700 [exp]	9.48	0.9170
AT4G03230			S-locus lectin protein kinase ...		Potri.019G119700 [exp]	9.48	0.9468
AT5G42760			Leucine carboxyl methyltransfe...		Potri.002G260300 [exp]	10.00	0.9522
AT4G03230			S-locus lectin protein kinase ...		Potri.019G119750 [exp]	10.09	0.9468
AT2G19130			S-locus lectin protein kinase ...		Potri.013G096400 [exp]	11.31	0.9312
AT5G62680			Major facilitator superfamily ...		Potri.001G351200 [exp]	12.84	0.9323
AT5G57180		CIA2	chloroplast import apparatus 2...		Potri.006G075200 [exp]	13.41	0.9375
AT2G19130			S-locus lectin protein kinase ...		Potri.013G096000 [exp]	15.00	0.9202

Compare expression of checked genes

Potri.016G016400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.