Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21750 409 / 2e-139 UGT71B1 UDP-glucosyl transferase 71B1 (.1) AT3G21790 402 / 4e-136 UDP-Glycosyltransferase superfamily protein (.1) AT3G21780 394 / 4e-133 UGT71B6 UDP-glucosyl transferase 71B6 (.1) AT3G21800 385 / 9e-130 UGT71B8 UDP-glucosyl transferase 71B8 (.1) AT3G21760 379 / 2e-127 HYR1 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) AT4G15280 367 / 1e-122 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT4G15260 333 / 4e-111 UDP-Glycosyltransferase superfamily protein (.1) AT1G07250 337 / 6e-111 UGT71C4 UDP-glucosyl transferase 71C4 (.1) AT2G29740 331 / 7e-109 UGT71C2 UDP-glucosyl transferase 71C2 (.1) AT2G29730 330 / 2e-108 UGT71D1 UDP-glucosyl transferase 71D1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G016200 [exp] 783 / 0 AT3G21750 396 / 9e-135 UDP-glucosyl transferase 71B1 (.1) Potri.016G016100 [exp] 741 / 0 AT3G21790 431 / 1e-147 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G007350 [exp] 735 / 0 AT3G21790 427 / 5e-146 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G007400 [exp] 727 / 0 AT3G21790 380 / 9e-128 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016300 [exp] 725 / 0 AT3G21790 425 / 4e-145 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G007300 [exp] 699 / 0 AT3G21790 427 / 4e-146 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016600 [exp] 613 / 0 AT3G21780 330 / 2e-109 UDP-glucosyl transferase 71B6 (.1) Potri.016G016800 [exp] 607 / 0 AT3G21780 412 / 5e-140 UDP-glucosyl transferase 71B6 (.1) Potri.016G016900 [exp] 590 / 0 AT3G21750 422 / 8e-145 UDP-glucosyl transferase 71B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026795 [exp] 408 / 6e-139 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10026793 [exp] 408 / 2e-138 AT3G21780 407 / 4e-138 UDP-glucosyl transferase 71B6 (.1) Lus10036087 [exp] 400 / 1e-135 AT3G21790 455 / 3e-157 UDP-Glycosyltransferase superfamily protein (.1) Lus10036086 [exp] 384 / 3e-129 AT3G21760 431 / 2e-147 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10036088 [exp] 360 / 2e-119 AT3G21760 377 / 3e-126 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10039037 [exp] 327 / 5e-107 AT1G07250 378 / 8e-127 UDP-glucosyl transferase 71C4 (.1) Lus10010476 [exp] 320 / 5e-104 AT1G07250 342 / 7e-113 UDP-glucosyl transferase 71C4 (.1) Lus10003805 [exp] 315 / 6e-102 AT1G07250 332 / 5e-109 UDP-glucosyl transferase 71C4 (.1) Lus10039301 [exp] 268 / 3e-84 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10027334 [exp] 231 / 2e-73 AT1G07260 240 / 2e-77 UDP-glucosyl transferase 71C3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.016G016700.1 pacid=42810408 polypeptide=Potri.016G016700.1.p locus=Potri.016G016700 ID=Potri.016G016700.1.v4.1 annot-version=v4.1 ATGAAGAAAGCAGAGGTGGTGCTAATCCCCATACCTGCTATGGGCCATATTGTAGCAGTAGTGGAGATAGCTAAGCTTCTTGTTCAACGTGATGATCGAC TCTACACAACTGTGTTGGTAATGCATCCAACTCTTGACCCCAGCACTACCAAGTACAATGAGTCACTTGCTGCATCAACTCTCCCTGATCGTATGCGAGT CATTAACTTGCCCAGAGTTGAGTCCATAACGTCAGATACTAAAGCCAATAACTGGCTTAGTACTTTGATTGAAGGCCAAAAACCCCATGTCAAAGAATAT GTTTCAAAGACGAGAACTCAATTTGAGTTGAGCCTCGATGCTCCTCGAATTGCTGGGTTTATTTTTGATTCGTTTGCTACAGGACTGAAAGAAGTGGCCA ATGAATTTGGGTTTCCATGGTATGCTTTCTCTGCTCCAGGTGCAGCTTTTCTTGGTTGTGAATTGCATCTTCAGGCTCTTCATGATGAGCAGGGAGTGGA CCTTACTGAGTTCAAGAACTCGGACGTTGAGTTGAAAATTCCGAGTTTAGCGAACCCGCTTCCTGCTAAACTTTTGCCTTCGGTTTTGTTTCAGAAAGAT TCGCTCGCTAATTTCCTTGAGCAAGCAAGAGCATTGGCTGAAGCCAGAGGTATTTTGGTTAATACATTTTTCGAGTTTGAATCCAATGCGGTTAACTCTC TTTCAAATGGTAAAACCCCTCCAATATATCCGGTGGGACCGATTGTTAAACATGAAACAGACTGTCATGATGTGGGTTGGGATGGGAGCAAGAAGCACAG AGACAGAGACATCATGGAATGGCTTGATGATCAGCCTCCATCATCAGTTATGTTTTTGTGCTTTGGAAGTCATGGAAGTTTTAGGGAGAAACAGGTGAAA GAGATTGCCTGTGCACTAGAGAATAGTGGGCATCGATTCTTATGGTCGCTACGTAAACCTCCACCGAGAGAAAAGTGGGAACCCCCTAGTGATTATGCAA ATTTTCAAGAAATCTTACCGAAAGAGTTTTTAAACCGGACAGCTAAGATTGGGAAAGTAATCGGATGGGCACCTCAGGTTGACATATTGGCTCATCAAGC GATAGGAATGTTTGCTTCGCATTGTGGATGGAATTCTATACTAGAAAGTATAAGGTTTGGTGTTCCAATTGTCGCCTGGCCATTATATGCAGAGCAACAG TTCAATGCCTTTCAAATGGTAATTGAGTTGGGATTAGCCGTGGAAATTAAAATGGATTACAGGAGGGATTTTCATGGTGATAATGAAATAATTGTGGGTG CTGATGGTATAATGAAAGCAATAAAGCATGTTATGGAGCAAGGTAAAGAAATAAGAAAGAAGGCAAAAGAGATGAGCAGAATAAGTGAGAAAACCTTGAT GCCTGGTGGATGTTCGTATTCTTCTTTGGGTCGTTTAGTTGATGATATAATAGACAACCAGCCATGA
AA sequence Show only first row Show all	>Potri.016G016700.1 pacid=42810408 polypeptide=Potri.016G016700.1.p locus=Potri.016G016700 ID=Potri.016G016700.1.v4.1 annot-version=v4.1 MKKAEVVLIPIPAMGHIVAVVEIAKLLVQRDDRLYTTVLVMHPTLDPSTTKYNESLAASTLPDRMRVINLPRVESITSDTKANNWLSTLIEGQKPHVKEY VSKTRTQFELSLDAPRIAGFIFDSFATGLKEVANEFGFPWYAFSAPGAAFLGCELHLQALHDEQGVDLTEFKNSDVELKIPSLANPLPAKLLPSVLFQKD SLANFLEQARALAEARGILVNTFFEFESNAVNSLSNGKTPPIYPVGPIVKHETDCHDVGWDGSKKHRDRDIMEWLDDQPPSSVMFLCFGSHGSFREKQVK EIACALENSGHRFLWSLRKPPPREKWEPPSDYANFQEILPKEFLNRTAKIGKVIGWAPQVDILAHQAIGMFASHCGWNSILESIRFGVPIVAWPLYAEQQ FNAFQMVIELGLAVEIKMDYRRDFHGDNEIIVGADGIMKAIKHVMEQGKEIRKKAKEMSRISEKTLMPGGCSYSSLGRLVDDIIDNQP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G016700 [exp]	0	1
AT5G05460		AtENGase85A	Endo-beta-N-acetyglucosaminida...		Potri.010G184200 [exp]	1.41	0.9110
AT1G27290			unknown protein		Potri.001G058100 [exp]	2.44	0.9109
AT3G52600		ATCWINV2	cell wall invertase 2 (.1.2)		Potri.006G210600 [exp]	5.65	0.9158	BFRUCT1.1
AT2G27140			HSP20-like chaperones superfam...		Potri.012G070100 [exp]	9.59	0.8732
AT1G32910			HXXXD-type acyl-transferase fa...		Potri.007G003800 [exp]	11.22	0.8760
AT2G22590			UDP-Glycosyltransferase superf...		Potri.014G088400 [exp]	12.16	0.8594
AT3G28890		AtRLP43	receptor like protein 43 (.1.2...		Potri.010G009750 [exp]	12.24	0.8724
AT4G39230			NmrA-like negative transcripti...		Potri.009G118100 [exp]	17.66	0.8869
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Potri.004G049800 [exp]	17.88	0.8944	Pt-GRX.2
AT3G21780		UGT71B6	UDP-glucosyl transferase 71B6 ...		Potri.016G016800 [exp]	23.49	0.8994

Compare expression of checked genes

Potri.016G016700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.