Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21750 423 / 6e-145 UGT71B1 UDP-glucosyl transferase 71B1 (.1) AT3G21790 416 / 9e-142 UDP-Glycosyltransferase superfamily protein (.1) AT3G21780 403 / 4e-137 UGT71B6 UDP-glucosyl transferase 71B6 (.1) AT3G21760 399 / 3e-135 HYR1 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) AT3G21800 388 / 5e-131 UGT71B8 UDP-glucosyl transferase 71B8 (.1) AT4G15280 384 / 2e-129 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT2G29730 365 / 3e-122 UGT71D1 UDP-glucosyl transferase 71D1 (.1) AT1G07240 356 / 9e-119 UGT71C5 UDP-glucosyl transferase 71C5 (.1) AT2G29710 354 / 6e-118 UDP-Glycosyltransferase superfamily protein (.1) AT1G07250 348 / 2e-115 UGT71C4 UDP-glucosyl transferase 71C4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G016800 [exp] 623 / 0 AT3G21780 412 / 5e-140 UDP-glucosyl transferase 71B6 (.1) Potri.006G007350 [exp] 622 / 0 AT3G21790 427 / 5e-146 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016100 [exp] 619 / 0 AT3G21790 431 / 1e-147 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016400 [exp] 616 / 0 AT3G21790 395 / 2e-133 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G007400 [exp] 608 / 0 AT3G21790 380 / 9e-128 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016300 [exp] 605 / 0 AT3G21790 425 / 4e-145 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016700 [exp] 599 / 0 AT3G21750 409 / 3e-139 UDP-glucosyl transferase 71B1 (.1) Potri.006G007300 [exp] 580 / 0 AT3G21790 427 / 4e-146 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016200 [exp] 564 / 0 AT3G21750 396 / 9e-135 UDP-glucosyl transferase 71B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026795 [exp] 434 / 2e-149 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10036087 [exp] 434 / 2e-149 AT3G21790 455 / 3e-157 UDP-Glycosyltransferase superfamily protein (.1) Lus10026793 [exp] 408 / 1e-138 AT3G21780 407 / 4e-138 UDP-glucosyl transferase 71B6 (.1) Lus10036086 [exp] 392 / 1e-132 AT3G21760 431 / 2e-147 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10036088 [exp] 380 / 8e-128 AT3G21760 377 / 3e-126 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10010476 [exp] 349 / 1e-115 AT1G07250 342 / 7e-113 UDP-glucosyl transferase 71C4 (.1) Lus10003805 [exp] 336 / 1e-110 AT1G07250 332 / 5e-109 UDP-glucosyl transferase 71C4 (.1) Lus10039037 [exp] 328 / 2e-107 AT1G07250 378 / 8e-127 UDP-glucosyl transferase 71C4 (.1) Lus10039301 [exp] 291 / 2e-93 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10027542 [exp] 253 / 6e-79 AT3G16520 431 / 3e-148 UDP-glucosyl transferase 88A1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.016G016900.1 pacid=42809402 polypeptide=Potri.016G016900.1.p locus=Potri.016G016900 ID=Potri.016G016900.1.v4.1 annot-version=v4.1 ATGAAGATAGCGGAGCTGGTGTTCATCCCATTTCCAGCCATGGGCCATGTGGTACCAGCAGTGGAAACAGCTAAACTTCTTGTTGAATTTGACAATCGAG TTTCCACCACTGTTCTTCTAATGAAACCAGCTATTGACTCGAGTACCATCAAGTATACCGAGTCACTTGCTGCATCAACTTTGCCTGACCGTATGCGATT CATTGAATTGCCTTCTCTTGATGAACTCAGATCAAGAAAAGGTATTTGGCTAGATTCTTTGATAGAGGGTCAAAAACCCCATGTCAGAGAATTTGTTTCG AAGATCGTTTCAAAGTCCGATCTGAGCCCTGACTCGCCTCGACTTGCTGGATTTGTTTTTGATGCGTTTTGCACGGGAATGAAAGATTTGGCCGATGAAT TTGGTGTTCCCTGGTACGTTTTCTCTTCCTCAGGAGCAGCTTTTCTTGGTTGCTTGTCATATTTACAGGTTCTTCATGATGAGCAGAACATGGACATAAC TGAGTTCAAGAACTCAGATGCTATGTTAGAAATTCCGAGTTTTGTGAACCCAATGGCTGCTAGGCTTCTGCCATCTATGACGTTTAGGAAAGATTCGGTC CTTGTTTTGGTCGGCGCTGCTAGAAGGTTAAGGGAAGCTAGTGGTATTGTTGTAAATACATTTATAGAGTTGGAATCCTATGCAGTTAACTCCCTTTCTA AAATTGGCATCCCACCGTTGTATCCAGTGGGACCCATTGTGAATGTGGGGTCAGATAAAAGCAATGACAATAGAGAAATTATGGAATGGCTTGATGATCA ACCCCCATCATCTGTAGTGTTCTTGTGCTTTGGAAGCCTGGGAAGTTTTTGTGTGGATCAGGTGAAAGAGATTGCATATGCTCTCGAACACAGTGGGAAA AGATTTTTATGGGTTCTACAAAAACCTTCAAAAGGTAAGACGGAATCCGCAAGTGATTTTCAAGAAACTTTACCCGAAGGATTTTTAGATCGAACAACTG AGCTCGGAAAGGTGATTGGTTGGGCTCCGCAGGCAGAAATATTAGCCCACCGAGCTATCGGAGGGTTTGTTTCGCACTGCGGATGGAATTCTATACTAGA AAGTATATACTTCGGTGTTCCAATTGCTGCATGGCCGATATACGCAGAACAGCAATTTAATGCTTTTCAATTAGTGATTGAATTGGGATTAGGAGGAGAG ATTAAGATAGATTACATAGAGGGTTCTAACAGTGATGGCTATGAAATTGTGAGTGCTGACAGTATAAAGAAAGGAATAGAGGGTATAATGGAGGACGATA GTGAAATAAGAAAACGGGTGAAAAATATGAGTCAAGTAAGCAAGCAAGCCTTGACTGCTGGTGGATCTTCACACTCTTCACTGGGTCGTCTAATTGCAGA TGTTATGAGCAACATTCCATGA
AA sequence Show only first row Show all	>Potri.016G016900.1 pacid=42809402 polypeptide=Potri.016G016900.1.p locus=Potri.016G016900 ID=Potri.016G016900.1.v4.1 annot-version=v4.1 MKIAELVFIPFPAMGHVVPAVETAKLLVEFDNRVSTTVLLMKPAIDSSTIKYTESLAASTLPDRMRFIELPSLDELRSRKGIWLDSLIEGQKPHVREFVS KIVSKSDLSPDSPRLAGFVFDAFCTGMKDLADEFGVPWYVFSSSGAAFLGCLSYLQVLHDEQNMDITEFKNSDAMLEIPSFVNPMAARLLPSMTFRKDSV LVLVGAARRLREASGIVVNTFIELESYAVNSLSKIGIPPLYPVGPIVNVGSDKSNDNREIMEWLDDQPPSSVVFLCFGSLGSFCVDQVKEIAYALEHSGK RFLWVLQKPSKGKTESASDFQETLPEGFLDRTTELGKVIGWAPQAEILAHRAIGGFVSHCGWNSILESIYFGVPIAAWPIYAEQQFNAFQLVIELGLGGE IKIDYIEGSNSDGYEIVSADSIKKGIEGIMEDDSEIRKRVKNMSQVSKQALTAGGSSHSSLGRLIADVMSNIP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G016900 [exp]	0	1
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Potri.001G258100 [exp]	1.00	0.9791
AT5G09830			BolA-like family protein (.1)		Potri.001G309200 [exp]	2.00	0.9521
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G135001 [exp]	2.44	0.9604
AT1G23840			unknown protein		Potri.006G262900 [exp]	2.64	0.9417
AT1G50020			unknown protein		Potri.009G084800 [exp]	3.46	0.9576
AT4G03410			Peroxisomal membrane 22 kDa (M...		Potri.019G103200 [exp]	8.00	0.9401
AT5G49940		ATCNFU2, NFU2	CHLOROPLAST-LOCALIZED NIFU-LIK...		Potri.003G009300 [exp]	10.48	0.9381
AT4G25040			Uncharacterised protein family...		Potri.017G062100 [exp]	10.48	0.9441
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G135300 [exp]	10.67	0.9427
AT1G79510			Uncharacterized conserved prot...		Potri.010G173000 [exp]	11.95	0.9379

Compare expression of checked genes

Potri.016G016900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.