Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21750 288 / 4e-93 UGT71B1 UDP-glucosyl transferase 71B1 (.1) AT3G21780 281 / 1e-90 UGT71B6 UDP-glucosyl transferase 71B6 (.1) AT3G21790 281 / 2e-90 UDP-Glycosyltransferase superfamily protein (.1) AT4G15280 270 / 5e-86 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT3G21760 268 / 3e-85 HYR1 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) AT3G21800 261 / 8e-83 UGT71B8 UDP-glucosyl transferase 71B8 (.1) AT2G29740 233 / 4e-72 UGT71C2 UDP-glucosyl transferase 71C2 (.1) AT1G07250 230 / 9e-71 UGT71C4 UDP-glucosyl transferase 71C4 (.1) AT4G15260 220 / 3e-68 UDP-Glycosyltransferase superfamily protein (.1) AT1G07240 221 / 2e-67 UGT71C5 UDP-glucosyl transferase 71C5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G016400 [exp] 738 / 0 AT3G21790 395 / 2e-133 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016800 [exp] 695 / 0 AT3G21780 412 / 5e-140 UDP-glucosyl transferase 71B6 (.1) Potri.016G016100 [exp] 501 / 1e-176 AT3G21790 431 / 1e-147 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G007350 [exp] 501 / 2e-176 AT3G21790 427 / 5e-146 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G007400 [exp] 495 / 3e-174 AT3G21790 380 / 9e-128 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016300 [exp] 481 / 2e-168 AT3G21790 425 / 4e-145 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016900 [exp] 471 / 7e-165 AT3G21750 422 / 8e-145 UDP-glucosyl transferase 71B1 (.1) Potri.016G016700 [exp] 470 / 2e-164 AT3G21750 409 / 3e-139 UDP-glucosyl transferase 71B1 (.1) Potri.016G016200 [exp] 452 / 1e-157 AT3G21750 396 / 9e-135 UDP-glucosyl transferase 71B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036087 [exp] 310 / 9e-102 AT3G21790 455 / 3e-157 UDP-Glycosyltransferase superfamily protein (.1) Lus10026795 [exp] 303 / 6e-99 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10026793 [exp] 301 / 4e-98 AT3G21780 407 / 4e-138 UDP-glucosyl transferase 71B6 (.1) Lus10036086 [exp] 269 / 2e-85 AT3G21760 431 / 2e-147 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10036088 [exp] 250 / 4e-78 AT3G21760 377 / 3e-126 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10003805 [exp] 210 / 8e-63 AT1G07250 332 / 5e-109 UDP-glucosyl transferase 71C4 (.1) Lus10039037 [exp] 208 / 4e-62 AT1G07250 378 / 8e-127 UDP-glucosyl transferase 71C4 (.1) Lus10010476 [exp] 207 / 1e-61 AT1G07250 342 / 7e-113 UDP-glucosyl transferase 71C4 (.1) Lus10039301 [exp] 184 / 5e-53 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10027542 [exp] 164 / 7e-46 AT3G16520 431 / 3e-148 UDP-glucosyl transferase 88A1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.016G017002.1 pacid=42809505 polypeptide=Potri.016G017002.1.p locus=Potri.016G017002 ID=Potri.016G017002.1.v4.1 annot-version=v4.1 ATGAAGAAAGCAGAGTTAGTGTTCATCCCTTTACCTGCCATGGGCCATATTATAGCAGCAGTAGAGATTGCCAAGCTTATTGTTGAACGTGATGATCGAA TTTCCACAAGCGTCCTCATAATGAGGCCAACTCTTGACTCCACTACCACCAAATACACTGAGTCACTCACTCCATCAACTCTACCCAATCGCATACGAGT CGTTGATTTGCCCTGTCTTGAGCACACCGCTGTACATAACACTGGTGCTAGCTGGATGGCTTCTCTGGCTGAAGCTCAGAAAAACCATGTCAAAGAATTT GTTTCGAAGATCAAGGCTCAGTCAGAGTTGAGCCCAAATGACTCTCCTCGACTTGCTGGGTTTGTTTTGGATACTTTTGTTTTGGGAATGAATGATTTGG CTGGAGAATTTGGTGTTCCCTGGTATGTTTTCTCGGCTTCAGGTGCAGCTTTTATCGGCTCGATGTTGTATCTTCAGGCCCTTCATGACGAGCAGAAAGC GGATCTCCCTGAGTACAAAGACTCGGATGCTGAGTTGGAAATTCCAAGCTTGGTGAACAGGCTTCCTGCTAAGCTCCTGCCTTCTTTGGTGTTTAACAGA GAATCTCTCCCTATTTTTCTTGGTGCTGCAAGAAGGTTGAAGCACGCAAGGGGCATTTTGATAAATACATTCAAAGAGTTAGAATCGCATGCAATAAACT CTCTTTCTAAGGGTGAAATCCCTCCTGCATATCCGTTGGGACCAGTTGTGAGATGTAAAGGAAACAGCTATGATGTGGGATCAGGTCAAATCAACGACTA CAAGGACATAATGCAATGGCTTGATGATCAGCCTCCATGCTCAGTAGTGTTTTTGTGCTTCGGGAGTTGGGGAAGTTTCAGCGTTGATCAAGTGAAAGAG ATTGCATATGCATTGGAGCAATGTGGACATCGATTCTTGTGGTGTCTGCGTGAACGTCCATGCAGGGGTAAGATTGAATCACCAAGTGATTATGTAAATT TTCAAGACATTTTGCCTGAAGGGTTTTTAGATCGATCAGTTAAGATAGGAAAGGTGATTAAATGGGCTCCGCAAGTGGAAATCTTGGGGCACAAAGCTAT TGGGGCACAAAGCTATTGGAGGATTTGTATCACATTGTGGATGGAATTCTACCTTAGAAAGTACTTTGTCTGGTGTCCCAATTGCCACATGGCCATTGTA TGGAGAGCAACAATTTAA
AA sequence Show only first row Show all	>Potri.016G017002.1 pacid=42809505 polypeptide=Potri.016G017002.1.p locus=Potri.016G017002 ID=Potri.016G017002.1.v4.1 annot-version=v4.1 MKKAELVFIPLPAMGHIIAAVEIAKLIVERDDRISTSVLIMRPTLDSTTTKYTESLTPSTLPNRIRVVDLPCLEHTAVHNTGASWMASLAEAQKNHVKEF VSKIKAQSELSPNDSPRLAGFVLDTFVLGMNDLAGEFGVPWYVFSASGAAFIGSMLYLQALHDEQKADLPEYKDSDAELEIPSLVNRLPAKLLPSLVFNR ESLPIFLGAARRLKHARGILINTFKELESHAINSLSKGEIPPAYPLGPVVRCKGNSYDVGSGQINDYKDIMQWLDDQPPCSVVFLCFGSWGSFSVDQVKE IAYALEQCGHRFLWCLRERPCRGKIESPSDYVNFQDILPEGFLDRSVKIGKVIKWAPQVEILGHKAIGAQSYWRICITLWMEFYLRKYFVWCPNCHMAIV WRATI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G017002 [exp]	0	1
AT3G21790			UDP-Glycosyltransferase superf...		Potri.016G016400 [exp]	2.00	0.9941
AT4G03230			S-locus lectin protein kinase ...		Potri.019G119750 [exp]	4.00	0.9630
AT1G07030			Mitochondrial substrate carrie...		Potri.016G125200 [exp]	5.74	0.9533
AT5G16340			AMP-dependent synthetase and l...		Potri.013G096200 [exp]	6.00	0.9647
AT4G03230			S-locus lectin protein kinase ...		Potri.019G119700 [exp]	7.00	0.9586
AT5G42760			Leucine carboxyl methyltransfe...		Potri.002G260300 [exp]	7.74	0.9624
AT2G19130			S-locus lectin protein kinase ...		Potri.013G096400 [exp]	10.48	0.9381
AT2G19130			S-locus lectin protein kinase ...		Potri.013G096000 [exp]	11.83	0.9307
AT5G62680			Major facilitator superfamily ...		Potri.001G351200 [exp]	14.38	0.9373
AT1G64500			Glutaredoxin family protein (....		Potri.003G141800 [exp]	14.96	0.9551

Compare expression of checked genes

Potri.016G017002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.