Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21760 499 / 1e-174 HYR1 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) AT3G21750 499 / 1e-174 UGT71B1 UDP-glucosyl transferase 71B1 (.1) AT3G21780 482 / 5e-168 UGT71B6 UDP-glucosyl transferase 71B6 (.1) AT3G21790 483 / 7e-168 UDP-Glycosyltransferase superfamily protein (.1) AT3G21800 451 / 6e-156 UGT71B8 UDP-glucosyl transferase 71B8 (.1) AT4G15280 436 / 5e-150 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT4G15260 400 / 2e-137 UDP-Glycosyltransferase superfamily protein (.1) AT1G07250 395 / 5e-134 UGT71C4 UDP-glucosyl transferase 71C4 (.1) AT2G29740 380 / 7e-128 UGT71C2 UDP-glucosyl transferase 71C2 (.1) AT2G29730 369 / 9e-124 UGT71D1 UDP-glucosyl transferase 71D1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G016500 [exp] 885 / 0 AT3G21790 479 / 1e-166 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G017100 [exp] 879 / 0 AT3G21750 471 / 1e-163 UDP-glucosyl transferase 71B1 (.1) Potri.016G017300 [exp] 862 / 0 AT3G21780 477 / 5e-166 UDP-glucosyl transferase 71B6 (.1) Potri.016G017400 [exp] 808 / 0 AT3G21790 474 / 9e-165 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G017166 [exp] 702 / 0 AT3G21760 426 / 6e-148 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.006G007200 [exp] 667 / 0 AT3G21790 439 / 8e-151 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G007600 [exp] 605 / 0 AT3G21760 448 / 3e-154 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016000 [exp] 598 / 0 AT3G21750 456 / 6e-158 UDP-glucosyl transferase 71B1 (.1) Potri.006G007000 [exp] 563 / 0 AT3G21760 449 / 5e-155 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036087 [exp] 504 / 8e-177 AT3G21790 455 / 3e-157 UDP-Glycosyltransferase superfamily protein (.1) Lus10026795 [exp] 501 / 1e-175 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10026793 [exp] 465 / 8e-161 AT3G21780 407 / 4e-138 UDP-glucosyl transferase 71B6 (.1) Lus10036086 [exp] 464 / 1e-160 AT3G21760 431 / 2e-147 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10036088 [exp] 444 / 2e-152 AT3G21760 377 / 3e-126 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10039037 [exp] 400 / 2e-135 AT1G07250 378 / 8e-127 UDP-glucosyl transferase 71C4 (.1) Lus10010476 [exp] 340 / 6e-112 AT1G07250 342 / 7e-113 UDP-glucosyl transferase 71C4 (.1) Lus10003805 [exp] 338 / 5e-111 AT1G07250 332 / 5e-109 UDP-glucosyl transferase 71C4 (.1) Lus10027334 [exp] 252 / 2e-81 AT1G07260 240 / 2e-77 UDP-glucosyl transferase 71C3 (.1) Lus10039301 [exp] 259 / 9e-81 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.016G017232.1 pacid=42809533 polypeptide=Potri.016G017232.1.p locus=Potri.016G017232 ID=Potri.016G017232.1.v4.1 annot-version=v4.1 ATGAAGAAAGCTGAGCTGGTCTTCATACCAACACCAGGTATAAGCCACCTCGTATCCACAGTAGAGGTAGCAAAGCTTCTTGTAGACCGTGATGAGAGGC TTTCAATCACCTTCCTCATCATGAAACTACGTTCTGACCCCAAGATTGATAGGTTTATAAATTCAGTGAGTACAGCCTGTAATCGTATCCGGTTCATTGA CTTGCCTAAAGATGAGCCTGATCCAAACCAACCCAGGAAGTTTCTCTTTTCTTTGATTGAAGCCCAGAAACCCCATGTCACAGAAGAAGTCTGTAAGCTT GTGAGTCAGTCGGAGTCAAGCCCTGACTCGCCTCCTCTTGCTGGGTTTGTTCTTGATATGTTTTGTACATCTATGATAGATGTGGCCAATGAATTTGGTG TTCCATCATATATTTTCCTTACGTCAGGTGCAGCTTTTCTTGGCCTTCAATTTTATGTTCAGGCTCTTCACGATGACCGGAAAGTTGACCCTACTGAGTA CAAGGGCTCGGATGTTGAGTTGGTCATGCCGTGTTTGGCAAATCCTCTTCCAGCGAAGGTCTTGCCTTCTGTTATGCTTAACAAAGAGTGGCTGCCAAAT ATGCTCAGTCAAGCTAGAAGGTTTAGAGAAACTAAGGGTATTATAATAAACACATTTGAAGAGCTGGAATCTCATGCGATCAACTCCTTTTCTAAAGGTA ATAGCCCTCCGGTATATCCAGTGGGTCCCATTTTAAACCTTAATAGAGATGGTGATCGTGAGGAGGAGTCTGATAAACGCAAAGACATCAAGCAATGGCT TGATGATCAGCCCCTGTCCTCAGTAGTGTATCTATGCTTCGGCAGCATGGGGAGTTTCGGTGTGGATCAGGTGAAGGAAATCGCATGTGGGCTAGAGCAG AGCGGCCACCGATTCTTGTGGTCTCTACGTCAGCCACCACCGAAAGGTAAGATAGAACCTCCAAGCGATTACACTAATCCTCGGGAGGTCTTACCTGAAG GATTTTTGGATCGGACGGCTAACATTGGAAAAATAATTGGTTGGGCCCCACAGACAGATATTTTGGCCCATCCATCCGTACGAGGTTTTGTCTCCCACTG TGGATGGAACTCTATATTGGAAAGCATATGGTTTGGCGTTCCAATTGCCGCGTGGCCATTATATGCAGAGCAACAACTGAATGCCTTTCAAATAATTGTT GAGCTCGGATTGGGAGTGGAGATTAAAATGGATTATAGAAGAGAGTTTATCTCGGATGGTAATGAAAATGTCATTAGTGCCGGGGAGATCGAGAGAGGAG TGAGGTGTTTAATGGAGCTTTGCGATGAGAAGAGGGAGAGGTTGAAGGAGATGAGTGGAAAGGGCAAGAAGGCTTTGGAGAACGGTGGATCCTCGTTCAC TTGGTTAGGCCGTTTCATTCAAGATTCGGTGGACCACCTGCCATGA
AA sequence Show only first row Show all	>Potri.016G017232.1 pacid=42809533 polypeptide=Potri.016G017232.1.p locus=Potri.016G017232 ID=Potri.016G017232.1.v4.1 annot-version=v4.1 MKKAELVFIPTPGISHLVSTVEVAKLLVDRDERLSITFLIMKLRSDPKIDRFINSVSTACNRIRFIDLPKDEPDPNQPRKFLFSLIEAQKPHVTEEVCKL VSQSESSPDSPPLAGFVLDMFCTSMIDVANEFGVPSYIFLTSGAAFLGLQFYVQALHDDRKVDPTEYKGSDVELVMPCLANPLPAKVLPSVMLNKEWLPN MLSQARRFRETKGIIINTFEELESHAINSFSKGNSPPVYPVGPILNLNRDGDREEESDKRKDIKQWLDDQPLSSVVYLCFGSMGSFGVDQVKEIACGLEQ SGHRFLWSLRQPPPKGKIEPPSDYTNPREVLPEGFLDRTANIGKIIGWAPQTDILAHPSVRGFVSHCGWNSILESIWFGVPIAAWPLYAEQQLNAFQIIV ELGLGVEIKMDYRREFISDGNENVISAGEIERGVRCLMELCDEKRERLKEMSGKGKKALENGGSSFTWLGRFIQDSVDHLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.016G017232 [exp]	0	1
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.016G017166 [exp]	1.00	0.9950
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Potri.003G142301 [exp]	2.00	0.9747
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Potri.007G043700 [exp]	3.00	0.9653
AT5G61520			Major facilitator superfamily ...		Potri.004G233500 [exp]	6.48	0.9480
AT3G17650		YSL5, PDE321	pigment defective 321, YELLOW ...		Potri.017G151232 [exp]	7.93	0.9557
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.009G099032 [exp]	7.93	0.9585
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Potri.002G012000 [exp]	8.66	0.9614	FTSH2.2
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Potri.017G151800 [exp]	9.53	0.9499
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.006G036000 [exp]	10.39	0.9379
AT4G18960	MADS	AG	AGAMOUS, K-box region and MADS...		Potri.011G075800 [exp]	10.48	0.9536	AG1.1

Compare expression of checked genes

Potri.016G017232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.