Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32260 421 / 1e-148 ATCCT1 phosphorylcholine cytidylyltransferase (.1) AT4G15130 402 / 8e-142 ATCCT2 phosphorylcholine cytidylyltransferase2 (.1) AT2G38670 111 / 2e-27 PECT1 phosphorylethanolamine cytidylyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G006700 [exp] 487 / 5e-175 AT2G32260 443 / 1e-157 phosphorylcholine cytidylyltransferase (.1) Potri.001G159400 [exp] 405 / 4e-143 AT2G32260 418 / 4e-148 phosphorylcholine cytidylyltransferase (.1) Potri.003G075000 [exp] 405 / 1e-142 AT2G32260 417 / 1e-147 phosphorylcholine cytidylyltransferase (.1) Potri.016G143600 [exp] 114 / 1e-28 AT2G38670 682 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.018G132700 [exp] 114 / 2e-28 AT2G38670 510 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.006G071000 [exp] 112 / 9e-28 AT2G38670 521 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.006G113900 [exp] 111 / 2e-27 AT2G38670 668 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003808 [exp] 454 / 2e-161 AT2G32260 468 / 8e-167 phosphorylcholine cytidylyltransferase (.1) Lus10010471 [exp] 447 / 6e-159 AT2G32260 466 / 3e-166 phosphorylcholine cytidylyltransferase (.1) Lus10027337 [exp] 407 / 6e-143 AT2G32260 428 / 4e-151 phosphorylcholine cytidylyltransferase (.1) Lus10036229 [exp] 375 / 4e-131 AT2G32260 400 / 3e-141 phosphorylcholine cytidylyltransferase (.1) Lus10038368 [exp] 372 / 4e-130 AT2G32260 398 / 2e-140 phosphorylcholine cytidylyltransferase (.1) Lus10039039 [exp] 234 / 3e-76 AT2G32260 248 / 5e-82 phosphorylcholine cytidylyltransferase (.1) Lus10000195 [exp] 216 / 9e-70 AT4G15130 244 / 5e-81 phosphorylcholine cytidylyltransferase2 (.1) Lus10027604 [exp] 118 / 1e-29 AT2G38670 546 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10022942 [exp] 114 / 2e-28 AT2G38670 539 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10017147 [exp] 103 / 7e-25 AT2G38670 506 / 1e-179 phosphorylethanolamine cytidylyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF01467 [poplar] [flax] CTP_transf_like Cytidylyltransferase-like
Representative CDS sequence Show only first row Show all	>Potri.016G017500.1 pacid=42810229 polypeptide=Potri.016G017500.1.p locus=Potri.016G017500 ID=Potri.016G017500.1.v4.1 annot-version=v4.1 ATGGCAGAGACAGAACAGCAAGAGAAGAAGATGATGAATGGAAATGGCTGCAAAGTCTCTTGTCATTCGAATTCTGATCCTTCAACACTACCACCATCGT CTGATCGCCCTGTTCGTGTTTATGCTGATGGGATCTATGATCTCTTCCATTTTGGCCACGCTCGCTCCCTTGAACAAGCCAAAAAATCGTTTCCAAACAC GTACTTGCTCGTAGGATGTTGCAATGATGATACCACACACAAGTACAAGGGCAAAACCGTTATGACAGAGGATGAACGTTATGAATCTCTTCGCCATTGC AAGTGGGTGGACGAAGTCATTCCTGATGCGCCTTGGGTTATTGATCAAGAATTTCTTGACAAGCACAATATTGACTATGTTGCTCACGATTCTCTACCGT ATGCCGATGCCAGTGGAGCTGGAAAGGATGTCTATGAATTTGTAAAAAAAGTTGGGAGATTCAAGGAAACGAAAAGAACTGATGGCATTTCTACATCGGA CATTATAATGAGGATTGTTAAAGACTACAACCAGTATGTGTTGCGTAACTTGGATCGAGGATATTCAAGAAAAGAGCTTGGTGTTAGCTACGTAAAGGAA AAGCGACTGAGGGTGAACATGAGATTGAAAAAACTACAAGAGAAAGTGAAGGAACAACAAGAAAAAGTTGGAGAAAAGATTCAAATTGTCACAATGCATC GTAATGAATGGGTGGAAAATGCTGATCGCTTGGTTGCTGGATTTCTTGAGATGTTTGAAGAAGGTTGCCATAAAATGGGCACTGCCATTAGGGATCGAAT TCAAGAGCGATTGAGAGGGCAGCAATCAAACAGGCTGCTGGAAAATGGCAAGGAGAACAGTGAAGATGAAGAGGAAGAATATTATGATGATGATGATGAT TATGATGATGAAGAAGAATATTTTGACAATGAAGAATACTATGCTGAGACATATAACAAAGATGCAAAAATTAAGAATTAG
AA sequence Show only first row Show all	>Potri.016G017500.1 pacid=42810229 polypeptide=Potri.016G017500.1.p locus=Potri.016G017500 ID=Potri.016G017500.1.v4.1 annot-version=v4.1 MAETEQQEKKMMNGNGCKVSCHSNSDPSTLPPSSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDDTTHKYKGKTVMTEDERYESLRHC KWVDEVIPDAPWVIDQEFLDKHNIDYVAHDSLPYADASGAGKDVYEFVKKVGRFKETKRTDGISTSDIIMRIVKDYNQYVLRNLDRGYSRKELGVSYVKE KRLRVNMRLKKLQEKVKEQQEKVGEKIQIVTMHRNEWVENADRLVAGFLEMFEEGCHKMGTAIRDRIQERLRGQQSNRLLENGKENSEDEEEEYYDDDDD YDDEEEYFDNEEYYAETYNKDAKIKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Potri.016G017500 [exp]	0	1
AT3G05700			Drought-responsive family prot...		Potri.005G020900 [exp]	2.00	0.7807
AT5G41700		ATUBC8, UBC8	ARABIDOPSIS THALIANA UBIQUITIN...		Potri.006G110200 [exp]	2.23	0.7946
AT1G68490			unknown protein		Potri.012G056500 [exp]	3.46	0.7618
AT1G09815		POLD4	polymerase delta 4 (.1)		Potri.019G042900 [exp]	4.47	0.7578
AT3G26420		ATRZ-1A	RZ-1A, RNA-binding (RRM/RBD/RN...		Potri.001G207100 [exp]	4.69	0.7054
AT3G05675			BTB/POZ domain-containing prot...		Potri.006G202900 [exp]	7.74	0.6979
AT1G68490			unknown protein		Potri.015G047100 [exp]	8.48	0.7230
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Potri.016G138900 [exp]	8.66	0.7371
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Potri.006G032100 [exp]	10.09	0.7348	RHC1.2
AT4G13530			unknown protein		Potri.013G099200 [exp]	10.95	0.7083

Compare expression of checked genes

Potri.016G017500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.